Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01210 841 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G25320 751 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G66830 560 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G67510 440 / 3e-145 Leucine-rich repeat protein kinase family protein (.1) AT4G37250 358 / 7e-113 Leucine-rich repeat protein kinase family protein (.1) AT4G34220 326 / 5e-101 Leucine-rich repeat protein kinase family protein (.1) AT5G67280 319 / 1e-98 RLK receptor-like kinase (.1) AT2G42290 295 / 1e-90 Leucine-rich repeat protein kinase family protein (.1) AT2G15300 298 / 2e-90 Leucine-rich repeat protein kinase family protein (.1) AT2G23300 291 / 1e-87 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043480 [exp] 1203 / 0 AT2G01210 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033569 [exp] 586 / 0 AT1G66830 665 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017611 [exp] 583 / 0 AT1G66830 672 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015799 [exp] 411 / 1e-133 AT1G67510 959 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037006 [exp] 394 / 1e-127 AT1G67510 915 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030333 [exp] 323 / 9e-100 AT4G37250 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10010263 [exp] 321 / 1e-98 AT4G37250 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019315 [exp] 317 / 8e-98 AT4G37250 728 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011509 [exp] 304 / 6e-93 AT4G37250 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G124300 [exp] 953 / 0 AT2G01210 987 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G120100 [exp] 945 / 0 AT2G01210 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G095700 [exp] 640 / 0 AT2G01210 735 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G119000 [exp] 626 / 0 AT2G01210 711 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G058200 [exp] 463 / 3e-153 AT1G67510 989 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G176900 [exp] 449 / 7e-149 AT1G67510 923 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G048800 [exp] 373 / 1e-118 AT2G23300 706 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G142300 [exp] 363 / 9e-115 AT4G37250 733 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G300700 [exp] 345 / 3e-108 AT4G34220 620 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G050800 [exp] 284 / 3e-86 AT3G57830 713 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10034108 pacid=23154822 polypeptide=Lus10034108 locus=Lus10034108.g ID=Lus10034108.BGIv1.0 annot-version=v1.0 ATGTCCGCTTTGATTTTGCTGGTTCTTCTTCTCCTCTGCAATTCCCATTGTTCTTCTTCATTGAACGAAGAAGGTAATGCGCTTTTAGCCTTCAAGCAGT CCATATCTCAAGACCCAGAAGGGTCTCTAAGCAACTGGGACACCACTCAGGACAATCCTTGCTCCTGGAATGGGGTCACATGCAAAGACCTCAAAGTTGT CTCTTTAAGCATCCCAAAGAAGAAGCTTTACGGCTTTCTCCCTCCAGCCGCCTTAGGGTCTCTACCTGACCTCAGGCATGTCAATTTAAGGAACAACAAC TTGTTCGGTACTTTGCCTGCCACACTTTTCCTTCAAGCTCAAGGGTTACAAAGCTTGGTCCTTTATGGGAATTCTTTCTCTGGATCTCTTCCAGATGAGA TTGGTAAGCTTAAATACCTCCAGTCACTCGATTTGTCGCAGAATTTCTTTAATGGCTCACTACCAACATCAATTGTGGAGTGCACAAGACTCAAAACCCT TGAGCTTAGCCGCAATAATTTCACCGGTTCTTTGCCTAGTGGGTTTGGGTCCGGTTTGGTTGCTCTTGAAAAGCTTGACCTTTCGTTGAACAAATTTGAT GGCTTGATTCCAAGTGATATGGGGAACTTGTCTAGCTTGCAAGGAACTGTGGACTTGTCACATAATTTCTTCAGTGGTTCTATCCCAGCTAGCCTTGGTA GTCTGCCTGAGAAGGTTTACATTGATTTGACTTACAACAACTTGAGCGGCCCTATACCTCAAAATGGTGCTCTAATGAACAGAGGGCCAACAGCATTCGT TGGGAATCCTGGCCTCTGTGGACCTCCTTTGAAAACCCCTTGTTCCCCCTCGGATGCTGCTTCAATTGCTGGTGGTTCACCTTCATCATCGATCCCGTAT TTACCTGGGCACGGCGCTCCTCGAGATGGAAGCAATGGGAAAAGAGGTGGCTTGAGTAAGGGTGCTGTGATTGCTATAATTGTGAGTGATGTGGTGGGGA TTTGCCTTGTTGGGTTGGTGTTTTCGTATTGTTACTCGAGAGTTTGTCATTGTCGTGGAGATAAGGATGGTTTCGAGAAGAGATGCAAAGTCAAGAAGCA CTGTCTGTGCTTTCGACGGAAGGATGAATCTGAAACTCCATCTGAGAATGTCGAGCAGTACGATCTCGTGGCGCTAGATGGACAGGTGGCATTCGACTTG GACGAGCTCCTCAAAGCGTCGGCTTTTGTCTTGGGGAAGAGTGGGATTGGGATTGTGTACAAAGTGGTACTTGAAGATGGGCTTACTTTGGCAGTGAGGA GACTTGGGGAAGGTGGCTCTCAGAGGTTTTTAAAGCTTTCATCTTTGCTTTCAAGTACTGAAATTTCATGGTATGTCTTGAAGCTTTCATCTTTGCTCCC AAGGAAGCCCGGTATGGTGTCGTTCACTCCGTTACCATGGCGAGTTCGGTTGAGTATCATGCAAGGAATTGCAAAAGGCTTGGTCTATCTCCATGAGTTC AGTCCAAAAAAGTATGTCCATGGAGACCTCAAACCCAACAATGTACTTCTAGGACAGAACATGGACCCCCAGATTTCTGACTTTGGTCTTGGCCGGCTTG CTAATATCGCCGGAGGAGGATCACCCCTAACATCGAATTCCACTCGAATTCCAGTCGAGAGGTCACAAGATAAGCCGGAGAGCGCACCCAGCAGCTTAGA TGTTGCAACAGTTTCGTCAACTGCCACGATGGGATCATATTACCAGGCTCCAGAAGCCATGAAAGTTGTGAAACCGTCGCAGAAATGGGATGTGTACTCG TACGGGGTGATCCTGCTCGAAATGCTAACGGGAAGATCTCCACTTGTTCACATGGGTACCTCAGACATTGATGTCGTTCACTGGATTCAGCTGTGCATCG AAGAGGAGAAGCCGCTGGTGGATGTTTTGGATCCATTTTTGGCACCCGATCTGGAGAAGGAAGAGGAAGAGATGATCGCTGTGCTGAAGGTAGCGATCGC GTGTGTTAATGCGAGCCCTGAAAGGAGACCTGCCATGAGGTATGTCTTGGATGCTTTGAACAGATTGCTCTGA
AA sequence Show only first row Show all	>Lus10034108 pacid=23154822 polypeptide=Lus10034108 locus=Lus10034108.g ID=Lus10034108.BGIv1.0 annot-version=v1.0 MSALILLVLLLLCNSHCSSSLNEEGNALLAFKQSISQDPEGSLSNWDTTQDNPCSWNGVTCKDLKVVSLSIPKKKLYGFLPPAALGSLPDLRHVNLRNNN LFGTLPATLFLQAQGLQSLVLYGNSFSGSLPDEIGKLKYLQSLDLSQNFFNGSLPTSIVECTRLKTLELSRNNFTGSLPSGFGSGLVALEKLDLSLNKFD GLIPSDMGNLSSLQGTVDLSHNFFSGSIPASLGSLPEKVYIDLTYNNLSGPIPQNGALMNRGPTAFVGNPGLCGPPLKTPCSPSDAASIAGGSPSSSIPY LPGHGAPRDGSNGKRGGLSKGAVIAIIVSDVVGICLVGLVFSYCYSRVCHCRGDKDGFEKRCKVKKHCLCFRRKDESETPSENVEQYDLVALDGQVAFDL DELLKASAFVLGKSGIGIVYKVVLEDGLTLAVRRLGEGGSQRFLKLSSLLSSTEISWYVLKLSSLLPRKPGMVSFTPLPWRVRLSIMQGIAKGLVYLHEF SPKKYVHGDLKPNNVLLGQNMDPQISDFGLGRLANIAGGGSPLTSNSTRIPVERSQDKPESAPSSLDVATVSSTATMGSYYQAPEAMKVVKPSQKWDVYS YGVILLEMLTGRSPLVHMGTSDIDVVHWIQLCIEEEKPLVDVLDPFLAPDLEKEEEEMIAVLKVAIACVNASPERRPAMRYVLDALNRLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01210			Leucine-rich repeat protein ki...		Lus10034108 [exp]	0	1
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10005782 [exp]	1.4	0.9123
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10018698 [exp]	1.4	0.9059
AT4G10920		KELP	transcriptional coactivator p1...		Lus10030245 [exp]	2.4	0.8990
AT1G69440		ZIP, AGO7	ZIPPY, ARGONAUTE7, Argonaute f...		Lus10037136 [exp]	4.6	0.8728
AT5G21030			PAZ domain-containing protein ...		Lus10025537 [exp]	7.9	0.9044
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Lus10023288 [exp]	8.7	0.9009
AT2G36490		DML1, ROS1	REPRESSOR OF SILENCING1, demet...		Lus10035576 [exp]	16.2	0.8865
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10009401 [exp]	17.0	0.8551
AT3G46960			RNA helicase, ATP-dependent, S...		Lus10017528 [exp]	20.2	0.9001
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10025101 [exp]	20.8	0.8621

Compare expression of checked genes

Lus10034108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.