Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63250 420 / 3e-142 DEA(D/H)-box RNA helicase family protein (.1) AT2G07750 415 / 5e-140 DEA(D/H)-box RNA helicase family protein (.1) AT5G63630 332 / 2e-108 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G08610 328 / 1e-106 PDE340 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G08620 320 / 3e-106 ATRH25, STRS2 STRESS RESPONSE SUPPRESSOR 2, RNA HELICASE 25, DEA(D/H)-box RNA helicase family protein (.1) AT3G18600 81 / 8e-17 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G19760 77 / 1e-15 EIF4A-III eukaryotic initiation factor 4A-III (.1) AT3G01540 76 / 4e-15 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT1G31970 75 / 6e-15 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT5G14610 75 / 7e-15 DEAD box RNA helicase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043479 [exp] 514 / 0 AT1G63250 767 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10004017 [exp] 317 / 3e-104 AT5G63630 797 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030265 [exp] 330 / 7e-103 AT3G61690 1089 / 0.0 nucleotidyltransferases (.1) Lus10010127 [exp] 293 / 4e-96 AT5G08610 639 / 0.0 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012633 [exp] 291 / 3e-95 AT5G08610 719 / 0.0 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023706 [exp] 82 / 1e-17 AT3G16840 361 / 5e-119 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009616 [exp] 83 / 2e-17 AT3G18600 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027240 [exp] 82 / 5e-17 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10004404 [exp] 81 / 1e-16 AT3G16840 874 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G124100 [exp] 440 / 5e-150 AT1G63250 883 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G107300 [exp] 422 / 3e-143 AT1G63250 841 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.002G169800 [exp] 325 / 5e-106 AT5G63630 810 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G097700 [exp] 320 / 3e-104 AT5G63630 768 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G045300 [exp] 82 / 3e-17 AT3G18600 747 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G250700 [exp] 82 / 4e-17 AT3G18600 740 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G063600 [exp] 78 / 7e-16 AT3G16840 782 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G098800 [exp] 76 / 2e-15 AT1G31970 726 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) Potri.005G093900 [exp] 76 / 2e-15 AT3G19760 693 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.007G070000 [exp] 75 / 4e-15 AT3G19760 689 / 0.0 eukaryotic initiation factor 4A-III (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10034109 pacid=23154651 polypeptide=Lus10034109 locus=Lus10034109.g ID=Lus10034109.BGIv1.0 annot-version=v1.0 ATGGTGTATTTCCCGGAAACTGTGCATACTGTGGTATCCAATTCTTTCACCACAGAACTTACAATTTCGTTTGTGCAGGTCCGCCGAATTTCTCAGCTTG TATTGAACAGAGACCACGATTTCATTGATACAGTTGGTCTGGGTAGTATAGAAACTCCTGTTAAGGTTAGGCAGTCTTTCCTTGTGGTTTCACATGAGCT CCATTTCCTAACTGTATATCATCTCTTGAAAGAACATATAATGGCAATACCTGATTACAAGGTCATTGTTTTCTGTACAACTGGGATGGTGACATCCCTG ATGTACCAAATTCTTCACGAGATGAAATTGAACGTGAGGGAGATACATTCTAGAAAGCCTCAACTATATCGTACTCGTGTCTCTGATGAATTCAAAGAAT CGAGACGGTTGATTCTCGTAACATCTGATGTATCAGCTCGGGGAATGAATTATCCTGACGTCACTTTAGTCATTCAGATGGGTATTCCTTCGGACCGCGA ACAGTACATTCATCGTCTTGGAAGAACGGGAAGGGAAGGCAAAGATGGGGAGGGGATCTTATTGGTGGCTCCATGGGAAGAATATTTCGTCGAGGAATTG AAGGAGTTGCCTCTGGAGAAAGTTCCCTCGCCTGATATAGATCCAGAAGCTAAACTTAAGATGGAGAGTTCGATAGCAAAAGTCGATACGAGCATCAAAG AGGCAGCTTATCATGCATGGCTGGGATATTACAACTCGATTAGGGAAATCGGGAGGGACAAAACCACCCTTGTTGAGCTGGCCAATAGGTTCTGTGAATC GATTGGTCTGAACAAACCTCCGTCTATCTTCAGGAAAACGGCTCTGAAAATGGGATTGAAAGATATCCCTGGAATCCGAATTCGCCAGTGA
AA sequence Show only first row Show all	>Lus10034109 pacid=23154651 polypeptide=Lus10034109 locus=Lus10034109.g ID=Lus10034109.BGIv1.0 annot-version=v1.0 MVYFPETVHTVVSNSFTTELTISFVQVRRISQLVLNRDHDFIDTVGLGSIETPVKVRQSFLVVSHELHFLTVYHLLKEHIMAIPDYKVIVFCTTGMVTSL MYQILHEMKLNVREIHSRKPQLYRTRVSDEFKESRRLILVTSDVSARGMNYPDVTLVIQMGIPSDREQYIHRLGRTGREGKDGEGILLVAPWEEYFVEEL KELPLEKVPSPDIDPEAKLKMESSIAKVDTSIKEAAYHAWLGYYNSIREIGRDKTTLVELANRFCESIGLNKPPSIFRKTALKMGLKDIPGIRIRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63250			DEA(D/H)-box RNA helicase fami...		Lus10034109 [exp]	0	1
AT5G40660			ATP12 protein-related (.1)		Lus10024202 [exp]	8.0	0.7958
AT3G63240			DNAse I-like superfamily prote...		Lus10014684 [exp]	10.2	0.7903
AT5G11860		SSP5	SCP1-like small phosphatase 5 ...		Lus10015787 [exp]	11.0	0.7946
AT1G64350		SEH1H	Transducin/WD40 repeat-like su...		Lus10003896 [exp]	15.2	0.7736
AT1G48175		TAD1, EMB2191	tRNA adenosine deaminase 1, em...		Lus10028482 [exp]	16.7	0.7314
AT2G45730			eukaryotic initiation factor 3...		Lus10033150 [exp]	16.9	0.7547
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10002285 [exp]	21.2	0.7700
AT5G45760			Transducin/WD40 repeat-like su...		Lus10007297 [exp]	21.2	0.7532
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Lus10016387 [exp]	22.2	0.7555
AT5G61330			rRNA processing protein-relate...		Lus10012469 [exp]	32.7	0.7586

Compare expression of checked genes

Lus10034109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.