Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63250 327 / 6e-105 DEA(D/H)-box RNA helicase family protein (.1) AT2G07750 322 / 2e-102 DEA(D/H)-box RNA helicase family protein (.1) AT5G08610 256 / 1e-77 PDE340 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G08620 247 / 2e-76 ATRH25, STRS2 STRESS RESPONSE SUPPRESSOR 2, RNA HELICASE 25, DEA(D/H)-box RNA helicase family protein (.1) AT5G63630 244 / 1e-73 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G65900 135 / 9e-35 DEA(D/H)-box RNA helicase family protein (.1) AT3G18600 132 / 1e-33 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G22330 122 / 3e-30 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT4G16630 119 / 7e-29 DEA(D/H)-box RNA helicase family protein (.1) AT2G47330 119 / 7e-29 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043479 [exp] 713 / 0 AT1G63250 767 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10012633 [exp] 250 / 8e-78 AT5G08610 719 / 0.0 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10004017 [exp] 243 / 1e-74 AT5G63630 797 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030265 [exp] 244 / 1e-71 AT3G61690 1089 / 0.0 nucleotidyltransferases (.1) Lus10010127 [exp] 191 / 1e-55 AT5G08610 639 / 0.0 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008989 [exp] 129 / 5e-33 AT3G18600 508 / 2e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009616 [exp] 129 / 1e-32 AT3G18600 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10007574 [exp] 126 / 3e-31 AT5G54910 862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10042754 [exp] 126 / 3e-31 AT1G16280 983 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G124100 [exp] 389 / 1e-128 AT1G63250 883 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G107300 [exp] 385 / 3e-127 AT1G63250 841 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.002G169800 [exp] 250 / 4e-76 AT5G63630 810 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G097700 [exp] 246 / 1e-74 AT5G63630 768 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G013900 [exp] 132 / 2e-34 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.009G045300 [exp] 128 / 2e-32 AT3G18600 747 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G241300 [exp] 127 / 1e-31 AT4G16630 829 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G250700 [exp] 126 / 2e-31 AT3G18600 740 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G068800 [exp] 124 / 2e-31 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.006G249100 [exp] 121 / 2e-30 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10034110 pacid=23154878 polypeptide=Lus10034110 locus=Lus10034110.g ID=Lus10034110.BGIv1.0 annot-version=v1.0 ATGGAGTTCGCTAGAATTAGAATGTCCGACCTCCTTCGTGCTGGCCTTGTTCGTGGTGGATGTCAAAGATTTCGTGTCATGAATAGAGCTGCAGATTTGT CGATTGACGATGGCGAGCCTCTGCAGGCTGCTGAGGCAAGGCCACGCATGCTAAACGAACGGTCGAATCTTAAACAAGGTCTATTGGTTTCACTCGTTGG CTCCAGGAGGGACTTCTCTACACTGAGAAGTTCAGGGGTTCCGAGTCCAAGTAATTTGGGCAAGCCGTCTGCTCAGAGACGACTAAGATATAAAAGAAAT GACAGTTCTTCAAGTGACGAGGATGAGTACTGGGAGTCTGGTTCAGAGGTTGGGGCGTCTGTGGGTGGAAAGAGACGTGCAAAAGAGATAGGTAGCTTGG CTGCTTTAGCTAACTATGATGTCAAAATCAGGAAGCGAGTCCCATTGAAGAAGGTCATGGAGGCGCTTGAATTTCCAAATGATGTGGAGTTGATTAGGCA TGAGATTGGTCAGAATAAGCTGGTTGAGGATGAAGAGAAGAGTTATAGAGGCAATGAAGATTCCTTTCTTAGTGAAAAAAGATTCGATGAGTGTGGTATA TCTCCATTGACAGCCAAGGCAATGACAGCAGCTGGCTATGTTCAAATGACCAGGGTGCAGGAAGCTACTTTATCTGCTTACCGTGATGGCAAAGATGCTA TGATTAAGGCCAAAACTGGCACTGGAAAGACTGCGGCTTATTTGCTTCCTGCAATTGAAGCAGTTCTGAAAGCAGCAAGTAGCGGAGTAAATCAAAGGGT GCGTCTAATACATGTGCTCATACTCTGTCCTACTCGGGAGCTAGCAAGTCAGATAACTGCGGAAGCAAATGCTTTGTTGAGGTTCCATGATGGAATTGGT GTCCAGTCGCTGGTTGGAGGTACTCGTTTCAAGGATGATCAGAGACGTCTGGAGTTAGATCCATGTCAGATAATCGTTGCAACTCCTGGTAGGCTGCTGG ATCATATCGAGAATAAAGGTGGTTTGTCTGTGCATTTGATGCGTTTGAAGATGCTAATACTTGATGAAGCCGATCATTTGCTAGACCTCGGATTCCGTAA AGATGTGGAGAAAATTGCGGATTGTTTGCCTCGTCAGAGGCAATCCTTAATGTTCTCCGCAACTATTCCAACATGA
AA sequence Show only first row Show all	>Lus10034110 pacid=23154878 polypeptide=Lus10034110 locus=Lus10034110.g ID=Lus10034110.BGIv1.0 annot-version=v1.0 MEFARIRMSDLLRAGLVRGGCQRFRVMNRAADLSIDDGEPLQAAEARPRMLNERSNLKQGLLVSLVGSRRDFSTLRSSGVPSPSNLGKPSAQRRLRYKRN DSSSSDEDEYWESGSEVGASVGGKRRAKEIGSLAALANYDVKIRKRVPLKKVMEALEFPNDVELIRHEIGQNKLVEDEEKSYRGNEDSFLSEKRFDECGI SPLTAKAMTAAGYVQMTRVQEATLSAYRDGKDAMIKAKTGTGKTAAYLLPAIEAVLKAASSGVNQRVRLIHVLILCPTRELASQITAEANALLRFHDGIG VQSLVGGTRFKDDQRRLELDPCQIIVATPGRLLDHIENKGGLSVHLMRLKMLILDEADHLLDLGFRKDVEKIADCLPRQRQSLMFSATIPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G07750			DEA(D/H)-box RNA helicase fami...		Lus10034110 [exp]	0	1
AT4G01860			Transducin family protein / WD...		Lus10009986 [exp]	7.1	0.8793
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10022115 [exp]	10.8	0.8811
AT4G01860			Transducin family protein / WD...		Lus10038045 [exp]	11.2	0.8684
AT1G55040			zinc finger (Ran-binding) fami...		Lus10031503 [exp]	13.3	0.8470
AT4G23540			ARM repeat superfamily protein...		Lus10035446 [exp]	21.8	0.8698
AT1G13630			Tetratricopeptide repeat (TPR)...		Lus10036836 [exp]	24.7	0.8317
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Lus10031042 [exp]	28.8	0.8651
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Lus10001170 [exp]	29.1	0.8689
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10003383 [exp]	33.0	0.8527
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10000108 [exp]	33.9	0.8410

Compare expression of checked genes

Lus10034110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.