Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06220 1706 / 0 GFA1, CLO, MEE5 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT5G25230 1639 / 0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT1G56070 575 / 0 LOS1, AT1G56075.1 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT3G12915 555 / 0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT3G22980 218 / 2e-58 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT1G62750 86 / 9e-17 ATSCO1, ATSCO1/CPEF-G SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1) AT2G45030 80 / 6e-15 Translation elongation factor EFG/EF2 protein (.1) AT1G45332 80 / 7e-15 Translation elongation factor EFG/EF2 protein (.1) AT5G39900 76 / 7e-14 Small GTP-binding protein (.1) AT5G08650 70 / 6e-12 Small GTP-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031129 [exp] 1918 / 0 AT1G06220 1751 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10043477 [exp] 931 / 0 AT1G06220 828 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10043478 [exp] 769 / 0 AT1G06220 729 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10031201 [exp] 469 / 3e-151 AT1G56070 1415 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031763 [exp] 462 / 6e-149 AT1G56070 1418 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031186 [exp] 377 / 5e-121 AT1G56070 902 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10004749 [exp] 343 / 1e-102 AT3G22980 1376 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031779 [exp] 331 / 8e-100 AT3G12915 760 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10031185 [exp] 131 / 2e-33 AT1G56070 504 / 6e-175 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G114900 [exp] 1786 / 0 AT1G06220 1710 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.006G190600 [exp] 1769 / 0 AT1G06220 1744 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.007G065700 [exp] 574 / 0 AT1G56070 1623 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065600 [exp] 574 / 0 AT1G56070 1620 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.005G098100 [exp] 570 / 0 AT1G56070 1648 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.009G152500 [exp] 231 / 8e-63 AT3G22980 1521 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.003G113500 [exp] 91 / 1e-18 AT1G62750 1310 / 0.0 SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1) Potri.001G123600 [exp] 75 / 2e-13 AT1G45332 1337 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.003G109900 [exp] 75 / 2e-13 AT1G45332 1330 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.006G053000 [exp] 72 / 1e-12 AT5G13650 1123 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0437 [flax] [poplar] EF-G_C PF00679 [flax] [poplar] EFG_C Elongation factor G C-terminus CL0329 [flax] [poplar] S5 PF03764 [flax] [poplar] EFG_IV Elongation factor G, domain IV CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain
Representative CDS sequence Show only first row Show all	>Lus10034111 pacid=23154848 polypeptide=Lus10034111 locus=Lus10034111.g ID=Lus10034111.BGIv1.0 annot-version=v1.0 ATGGATGATAATCTGTATGATGAGTTTGGGAATTACATTGGTCCGGAAATTGAGTCTGACCACGAGAGTGACGAGGAGGAAGATGAAGACCTTCAAGACA GGCCTCATGAAGATGAGGCTGCATCCGATGATGAGGAGGCAGGGAATGCGTCCAATGGTTGGTTGACAGCATCTGGCGATGTAGATATGGACAATCAGAT TGTTCTTGCTGAGGATAAGAAGTACTATCCTACAGCGGAAGAGGTGTATGGCGAAGATGTGGAAACTTTGGTAATGGATGAGGATGAGCTCCCGCTTGAG CAGCCAATCATTAAACCTGTACGGGACATCAAGATGGAGGTTGGGGTTAAGGACTCCTCAACTTTCGTCTCCAGCCAATTTCTTGTCGGTCTAATGTCAA ATCCTGCTCTTATTCGCAATGTTGCTCTCGTTGGACACATTCATCACGGGAAGACACTTTTCATGGATATGCTGGTAGAGCAAACGCATCATGTAACCAC GTTTAATACAAAGAGTGAAAAACATATGAGGTATACTGATACCAGAGTTGATGAGCAAGAAAGGAGAATATCCATCAAGGCAGTCCCGATGTCATTAGTT CTTGAAGATATCAATTCGAAATCCTACTTGTGCAACATCATGGACACTCCTGGTCATGCAAATTTTTCAGATGAAATGACTGCTGCCCTCAGGCTTGCTG ATGGTGCTGTGTTGGTTGTGGATGCTGCTGAAGGAGTGATGGTAAATACCGAGAGAGCAATACGCCATGCAATCCAGGAGCGCCTGCCTATTGTAGTTGT CATTAATAAGGTGGATAGACTGATAACAGAACTTAAGTTGCCTCCTAAGGATGCTTACCACAAGATAAGGCACACCATAGAGGTCATCAACAACCATATC TCTGCCGTCTCTTCAACTGCAGGGAATGCCACAGTTATAGATCCTATTGCTGGAAATGTTTGCTTTGCAAGTGCTACTGCTGGATGGTCATTCACTTTGC AATCATTTGCTAGGCTGTATCTTAAACTCCATAGTATTCCGTTTGACCCTGATAGGTTCGCAGCACGCATGTGGGGGGATATGTATTATCACCCAGATTC AAGGACCTTCAAGAAGAAACCCCCTGTTGCTGGAGGGGAAAGATCTTTTGTTCAATTTGTACTGGAACCTCTCTACAAAATATATAGCCAAGTGGTTGGA GAACACAAGAAGAGTGTGGAAACTACTCTGGCTGAGCTTGGTGTGACTCTTCCTAATGCTGCTTATAGATTGAATGTAAGGCCCTTGCTGAGGTTGGCTT GCAGCAGAGTTTTTGGTACAGCTTCAGGTTTCACTAATATGTTGGTTCGACATATACCCTCTGCTAAGGATTCAGCTGTGAGGAAGGTTGATCATATATA CACTGGTCCTAAAGATTCTTTGCTTTATAAAGCAATGACAGAATGTGATCCGTCTGGTCCCTTGATGATCAATGTGACCAAATTGTATCCCAAGCTTGAT TGCAGTTCCTTTGACGCTTTTGGTAGAGTCTATAGTGGTAAAGTTATGACAGGACAGTCTGTCAAAGTACTAGGAGAAGGTTATTCGCCAGAGGATGAGG AAGATATGACCGTGAAAGAAGTTACAAAGCTGTGTGTGTATCAAGCTCGGTATAGACTGCCTACAAGCATGGCACCACCTGGCTCTTGGGTTCTTATTGA AGGTGTAGATGCATCGATCATGAAAACAGCTACACTATGCAATGTGAATTATGATGATGATGTGTATATATTCCGGCCACTACAGTTCAATACCCTTCCA GTGGTAAAAACTGCTACTGAACCTTTGAATCCAAGCGAATTGCCAAAAATGGTGGAGGGTCTTAGGAAGATCAGCAAAAGCTATCCTCTTGCTATAACTA AAGTTGAAGAGTCTGGAGAGCACACTATTCTTGGTACTGGAGAATTATATTTGGATTCAATTATGAAAGACCTCAGGGAACTCTATTCTGAGGTAGAAGT CAAGGTAGCAGATCCTGTGGTGTCATTCTGTGAAACTGTAGTGGAATCATCTTCAATGAAATGTTTTGCTGAAACGCCCAACAAAAAGAATAAAATAACA ATGATAGCTGAGCCCTTGGAGAAAGGGCTTGCAGAAGACATTGAAAATGGAATCGTAAGCACTGATTGGAGCAGGAAAGCTATCGGCGACTTTTTTAAAA CCAAATATGACTGGGATTTGCTTGCCGCTCGGTCAATATGGGCATTTGGTCCCGATAAGCAGGGACCTAACATTTTATTGGACGACACACTTCCTACTGA AGTTGACAAGGGCTTGCTTAGTGCTGTCAAGGATTCTATTGTCCAAGGGTTTCAGTGGGGCGCACGAGAAGGACCTCTTTGTGATGAGCCAATCAGAAAT GTCAAATTTAAAATAGTTGATGCAAGAATTGCACCTGAACCATTGCACCGGGCGTCAGGTCAGATTATTCCCACGGCTAGGAGGGTAGCATATTCATCCT TCCTTATGGCAACACCTCGGCTGATGGAACCCGTGTATTATGTCGAGATACAAACACCCGTTGATTGCCTATCTGCAATTTATACCGTTTTGTCACGTAG ACGTGGACACGTGACAGCAGATGTTCCTCAGCCTGGAACTCCAGCTTATATTGTTAAGGCATTCTTACCAGTGATAGAGTCGTTTGGTTTCGAGACGGAC TTGAGGTACCATACCCAGGGGCAAGCATTCTGTCTCTCAGTGTTTGATCATTGGGCTATAGTACCGGGGGATCCTCTCGACAAAAGCATCGTTTTGCGGC CACTGGAGCCAGCACCTATCCAGCATCTTGCCCGTGAGTTTATGGTCAAGACCAGAAGGCGCAAGGGAATGAGCGAAGATGTGAGCATCAACAAGTTCTT TGACGAGGCTATGATGGTAGAGCTGGCTCAGCAGGCTGCTGACATTCATCAAATGATGTGA
AA sequence Show only first row Show all	>Lus10034111 pacid=23154848 polypeptide=Lus10034111 locus=Lus10034111.g ID=Lus10034111.BGIv1.0 annot-version=v1.0 MDDNLYDEFGNYIGPEIESDHESDEEEDEDLQDRPHEDEAASDDEEAGNASNGWLTASGDVDMDNQIVLAEDKKYYPTAEEVYGEDVETLVMDEDELPLE QPIIKPVRDIKMEVGVKDSSTFVSSQFLVGLMSNPALIRNVALVGHIHHGKTLFMDMLVEQTHHVTTFNTKSEKHMRYTDTRVDEQERRISIKAVPMSLV LEDINSKSYLCNIMDTPGHANFSDEMTAALRLADGAVLVVDAAEGVMVNTERAIRHAIQERLPIVVVINKVDRLITELKLPPKDAYHKIRHTIEVINNHI SAVSSTAGNATVIDPIAGNVCFASATAGWSFTLQSFARLYLKLHSIPFDPDRFAARMWGDMYYHPDSRTFKKKPPVAGGERSFVQFVLEPLYKIYSQVVG EHKKSVETTLAELGVTLPNAAYRLNVRPLLRLACSRVFGTASGFTNMLVRHIPSAKDSAVRKVDHIYTGPKDSLLYKAMTECDPSGPLMINVTKLYPKLD CSSFDAFGRVYSGKVMTGQSVKVLGEGYSPEDEEDMTVKEVTKLCVYQARYRLPTSMAPPGSWVLIEGVDASIMKTATLCNVNYDDDVYIFRPLQFNTLP VVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKIT MIAEPLEKGLAEDIENGIVSTDWSRKAIGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKGLLSAVKDSIVQGFQWGAREGPLCDEPIRN VKFKIVDARIAPEPLHRASGQIIPTARRVAYSSFLMATPRLMEPVYYVEIQTPVDCLSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETD LRYHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSEDVSINKFFDEAMMVELAQQAADIHQMM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10034111 [exp]	0	1
AT2G33340		MAC3B	MOS4-associated complex 3B (....		Lus10023728 [exp]	3.3	0.9476
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10026024 [exp]	4.1	0.9591
AT2G04235			unknown protein		Lus10016054 [exp]	4.7	0.9583
AT1G64260			MuDR family transposase (.1)		Lus10010073 [exp]	5.9	0.9364
AT3G57060			binding (.1.2)		Lus10027308 [exp]	6.7	0.9571
AT2G41620			Nucleoporin interacting compon...		Lus10039624 [exp]	8.7	0.9445
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Lus10005012 [exp]	10.4	0.9387
AT5G53620			unknown protein		Lus10032948 [exp]	11.4	0.9330
AT3G48150		CDC23, APC8	anaphase-promoting complex sub...		Lus10042152 [exp]	12.4	0.9186
AT5G18750			DNAJ heat shock N-terminal dom...		Lus10012795 [exp]	12.9	0.9157

Compare expression of checked genes

Lus10034111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.