Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23050 42 / 3e-05 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043476 [exp] 86 / 4e-22 AT1G23050 57 / 6e-11 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034112 pacid=23154653 polypeptide=Lus10034112 locus=Lus10034112.g ID=Lus10034112.BGIv1.0 annot-version=v1.0 ATGTCCACTGCTTCCTTAATCGCCGCTGGCATGTCACTTCTCCTCCTCCTCCTCCTCTGCCTACGACCTGTCTTCACCATAGCCGACGACACATGCCCTT ACCCATGTTACCCTCCTCCAACCACCCCCGGATCCCCTGCCTCTGTCACCAACAACCCACCTCCGTCTTCCCAATCCTCATCGTATCCTCCGCCTCCGGC CGGATACTACCCTTCGCCGGCGGATAATTACTATATGCCGCCGCCGCCGCCTCCAGGTAACAATAACAACTACGGCTACAACAATCCACCACCCAACGCT ATCCTTCCCTACTTCCCTTACTACTACAGAAAGCCTCCCCAAAATCCTGACGGTTCTGGGTCAACGGCGCCGCTGCTGCTCGGAGTCTGGTGGCCGACAA CGTTGGTGGCGTCCGGGGTTATCTTATTGTTGGGACTTTTCTAG
AA sequence Show only first row Show all	>Lus10034112 pacid=23154653 polypeptide=Lus10034112 locus=Lus10034112.g ID=Lus10034112.BGIv1.0 annot-version=v1.0 MSTASLIAAGMSLLLLLLLCLRPVFTIADDTCPYPCYPPPTTPGSPASVTNNPPPSSQSSSYPPPPAGYYPSPADNYYMPPPPPPGNNNNYGYNNPPPNA ILPYFPYYYRKPPQNPDGSGSTAPLLLGVWWPTTLVASGVILLLGLF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70985			hydroxyproline-rich glycoprote...		Lus10034112 [exp]	0	1
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Lus10022352 [exp]	3.5	0.9109
AT5G13420			Aldolase-type TIM barrel famil...		Lus10032613 [exp]	5.3	0.9094
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10022794 [exp]	6.2	0.8958
AT2G45290			Transketolase (.1)		Lus10030283 [exp]	8.2	0.8943
AT3G14680		CYP72A14	"cytochrome P450, family 72, s...		Lus10019184 [exp]	9.5	0.8401
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10020847 [exp]	12.4	0.8682
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10017404 [exp]	13.2	0.8713
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10011858 [exp]	13.6	0.8685
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10032388 [exp]	14.7	0.8670
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10021671 [exp]	16.5	0.8563

Compare expression of checked genes

Lus10034112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.