Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15440 1280 / 0 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) AT3G49660 90 / 2e-19 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 90 / 3e-19 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 92 / 9e-19 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 91 / 4e-18 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 88 / 1e-17 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 88 / 1e-17 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G41500 87 / 2e-17 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT4G15900 86 / 3e-17 PRL1 pleiotropic regulatory locus 1 (.1) AT5G67320 84 / 2e-16 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043473 [exp] 1382 / 0 AT1G15440 1058 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Lus10014674 [exp] 98 / 6e-22 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 94 / 1e-20 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 91 / 1e-19 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 89 / 6e-19 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10041007 [exp] 92 / 1e-18 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10030869 [exp] 92 / 1e-18 AT1G10580 939 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 91 / 1e-18 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10030620 [exp] 91 / 2e-18 AT1G10580 926 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G173500 [exp] 1464 / 0 AT1G15440 1342 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.003G060500 [exp] 1453 / 0 AT1G15440 1349 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.002G051900 [exp] 107 / 3e-25 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 92 / 6e-19 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.013G079600 [exp] 92 / 1e-18 AT5G16750 1186 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Potri.007G009500 [exp] 88 / 1e-18 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 91 / 2e-18 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 87 / 2e-18 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G144400 [exp] 89 / 5e-18 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.007G050100 [exp] 89 / 6e-18 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF04003 [flax] [poplar] Utp12 Dip2/Utp12 Family
Representative CDS sequence Show only first row Show all	>Lus10034114 pacid=23154798 polypeptide=Lus10034114 locus=Lus10034114.g ID=Lus10034114.BGIv1.0 annot-version=v1.0 ATGAATTATAGATTTCAAAATCTGCTGGGAGCTCCTTACCGAGGAGGAAACGCTGTTGTCATTCAGGATACTCAGCTAGTCTCTTCCGTTGGAAATCGTG TCTCCATAACCGACCTTCTAAAGTCCCAAACAATCACTCTTCCCTTTCAATCATCATCAAACCTACGCTGCATTGCTGCCTCACCTGATGGAACATTTCT CCTATCTGTTGATGAGAACAATCGTGCTCAGTTCCTGAACATTCCTGCCCGTGTATGCCTTCACCGAATAACTTTCAAACACGGTGCTGTGCATGCTGTC AAATTCAGTCCCGATGGGAAGTTTATTGCAGTGGCGACTGGAAAATTAGTTGAAATCTGGATGTCTCCTGGATTCAAGAAGGAGCCCTTTGCGTTCCACT TGGTTAGGACACTTGCAGATTGTCAGGATACTGTTACGGCATTGGAATGGAGCTTAGATTGTAAGTATCTGCTAGTTGGATCTAAGGATTTAACTGCACG GATTTTTTGTGTTGAGAAACTAACTGAAGGGATTATGAATAAGCCGTTTTTGCTATTAGGACACAGAGATACTGTTGTTGGTTGCTTCTTTGGATACAGT AAGAATAGTCATACACCAAATAAAGCTTACACCGTTGCACGCGATGGTTATATGTTTAGTTGGGGTTATGGTGGCCACGTTGACATGGAAGATCACCAGA ACTCTGAGCCTCTTTCACCAGGAACACCAGAAAAGGACGGGAAAGAAATTTTGAGTGGTGAATCTGGACGTAAGATAAAAAAACAAAGGACTCTTGACGT GAAAGAGGCTGATAGTTCCTCGAAGGAGTACCTACATAAGGGGAGATGGGAGTTGCTCCGCAAAGATGGATTTATGCAATCGCCAGCAAAAGTCACTTCT TGCGATTACCATAGGTTATTGGATATGATTGTGGTGGGATTTTCTAGTGGTGTTTTTGGGCTTTATCAAATGCCAGACTTTGTATGTATCCACCGGCTGT CGATTTCAAGGGAGAAGATCACTACTGCTGTGTTTAATGGGATTGGTAATTGGCTAACTTTTGGTTGTGCAAAGTTGGGGCAATTACTTGTATGGGAATG GAGGTCTGAAACTTATGTCTTGAAGCAACAAGGCCATTATTTTGATGTTAACTGTTTGGCTTATTCGCCAGATTCGCAATTGCTGGCTACCGGAGCAGAT GATAACAAAGTTAAGGTGTGGACTGTTTCATCAGGCTTTTGCTTTGTAACATTCTCAGAGCACACTAATGCTGTTACAGCCCTTCATTTCTTGTCTAATA ACCACTGTCTGTTGAGTGCCTCTCTAGATGGGACTGTACGTGCGTGGGATTTATTCCGCTATCGGAATTTTCGTACATTCACCACGCCATCATCAAGACA ATTTGTTTCCTTGGCAGCTGATGGAAGTGGTGAAGTTATTTGTGCTGGGACTCTAGATTCCTTTGAGATATTTGTATGGTCAATGAAGACTGGGCGTTTG TTGGATGTGCTTAGTGGTCATGAAGGTCCTGTTCATGGGTTGATGTTTTCTCCAGTTAGTGGAAACTTGGCGTCATCTTCATGGGACAAAACTGTTCGTC TGTGGGATATTTTTGAAGGAAGAAGCGCAGTTGAAACATTCTCACACACTCATGATGTTCTGACAGTGGTTTATCGTCCAGATGGAAAGCAATTGGCTAG CAGCACATTGGATGGTCAAATTAATTTCTGGGATCCAATTGATGGCATTCTAATGTACACAATTGAAGGGCGAAGGGATATTGCTGGAGGCCGTCTCATG ACTGATCGCAGATCAGCTGCAAATTCAACAGCTGGAAAATGCTTCACAACATTAAGCTACTCTGCCGATGGGAGTTATATTTTGGCAGGTGGTAGTAGCA AATATATATGCATGTATGACATTGCTGATCAGGTTCTGCTGCGTCGCTTTCAAATAACATTTAACCTCTCCATGGATGGAGTACATGACTTCTTAAACTC CAAGAGGATGACTGATGCTGGTCCACTAGACTTAATTGATGATGACGACTCTGATATGGAGGAAGGTGTCGACGTACAAACTCGGGGAAAATTGGGTGGC GATTTACCGGGGTCCACTCCAAATCGAGGACGGCCTATAATTCGAACAAAAGACCTCGAGCTTGCACCCACAGGGCGGAGCTTTTGTGCTGCGACAACAG AAGGGGTTCTAGTTTATTCAGTTGACGAAACTTTCATATTTGATCCTACTGATCTCGACATCGATGTCACACCAGAACCAGGATCAAACGTTTATACTAA CATTGATTCAATGCTGTCAATTGATTCACAGACTGTTAATGAAGCACTGGCTGAAAATCAACCAAGTAGAGGTCTAATCCTCAGCTTACGACTGAATGAG GATTCGTTGATAAAAAAATGCGTGTTTGCTGTGAGTACGGCTGATGTGCCAGCTGTTGCGTCATCAATTCCTCACAGATACCTGCAGCGGTTAATCGATG TACTAGCTAATCTCTTGGAAAGTTGCCCTCATCTGGAGTTTATTCTTAACTGGTGTCAGGAGCTATGCAAAGCTCACGGCAACTCGATCCAACAGAACTC GAGACAACTCCTTCCTGCTCTAAAATACCTGCAGAAGGCAATCACCAGAATACATCAGGACTTGGCGGATACATGTTCGGCCAACGAATATATGCTGAAA TATCTGTGCTCTACGCCACATACAAGTGAAGCCAGCAGCTGTGTCATGGATTCATCGGCCTAA
AA sequence Show only first row Show all	>Lus10034114 pacid=23154798 polypeptide=Lus10034114 locus=Lus10034114.g ID=Lus10034114.BGIv1.0 annot-version=v1.0 MNYRFQNLLGAPYRGGNAVVIQDTQLVSSVGNRVSITDLLKSQTITLPFQSSSNLRCIAASPDGTFLLSVDENNRAQFLNIPARVCLHRITFKHGAVHAV KFSPDGKFIAVATGKLVEIWMSPGFKKEPFAFHLVRTLADCQDTVTALEWSLDCKYLLVGSKDLTARIFCVEKLTEGIMNKPFLLLGHRDTVVGCFFGYS KNSHTPNKAYTVARDGYMFSWGYGGHVDMEDHQNSEPLSPGTPEKDGKEILSGESGRKIKKQRTLDVKEADSSSKEYLHKGRWELLRKDGFMQSPAKVTS CDYHRLLDMIVVGFSSGVFGLYQMPDFVCIHRLSISREKITTAVFNGIGNWLTFGCAKLGQLLVWEWRSETYVLKQQGHYFDVNCLAYSPDSQLLATGAD DNKVKVWTVSSGFCFVTFSEHTNAVTALHFLSNNHCLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLAADGSGEVICAGTLDSFEIFVWSMKTGRL LDVLSGHEGPVHGLMFSPVSGNLASSSWDKTVRLWDIFEGRSAVETFSHTHDVLTVVYRPDGKQLASSTLDGQINFWDPIDGILMYTIEGRRDIAGGRLM TDRRSAANSTAGKCFTTLSYSADGSYILAGGSSKYICMYDIADQVLLRRFQITFNLSMDGVHDFLNSKRMTDAGPLDLIDDDDSDMEEGVDVQTRGKLGG DLPGSTPNRGRPIIRTKDLELAPTGRSFCAATTEGVLVYSVDETFIFDPTDLDIDVTPEPGSNVYTNIDSMLSIDSQTVNEALAENQPSRGLILSLRLNE DSLIKKCVFAVSTADVPAVASSIPHRYLQRLIDVLANLLESCPHLEFILNWCQELCKAHGNSIQQNSRQLLPALKYLQKAITRIHQDLADTCSANEYMLK YLCSTPHTSEASSCVMDSSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Lus10034114 [exp]	0	1
AT5G25757			RNA polymerase I-associated fa...		Lus10038622 [exp]	1.4	0.9742
AT5G64420			DNA polymerase V family (.1)		Lus10037435 [exp]	1.4	0.9654
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Lus10011474 [exp]	3.0	0.9593
AT2G18900			Transducin/WD40 repeat-like su...		Lus10003637 [exp]	3.5	0.9582
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Lus10040493 [exp]	3.5	0.9538
AT4G07410		PCN	POPCORN, Transducin family pro...		Lus10024128 [exp]	3.9	0.9572
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Lus10024454 [exp]	4.2	0.9390
AT5G48240			unknown protein		Lus10036418 [exp]	5.1	0.9434
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Lus10023111 [exp]	5.9	0.9520
AT4G26600			S-adenosyl-L-methionine-depend...		Lus10023095 [exp]	6.0	0.9483

Compare expression of checked genes

Lus10034114 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.