Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48170 800 / 0 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT1G74920 798 / 0 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT3G24503 374 / 6e-124 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT3G48000 353 / 2e-115 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT1G23800 340 / 4e-110 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT1G79440 295 / 4e-93 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT3G66658 207 / 1e-59 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT1G54100 180 / 5e-50 ALDH7B4 aldehyde dehydrogenase 7B4 (.1.2) AT2G24270 176 / 2e-48 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4) AT2G14170 169 / 6e-46 ALDH6B2 aldehyde dehydrogenase 6B2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043470 [exp] 880 / 0 AT1G74920 818 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10042149 [exp] 806 / 0 AT1G74920 850 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10042148 [exp] 738 / 0 AT1G74920 763 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10004239 [exp] 646 / 0 AT1G74920 667 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10004238 [exp] 561 / 0 AT1G74920 533 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10023626 [exp] 341 / 1e-110 AT3G24503 753 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10023625 [exp] 335 / 1e-108 AT3G24503 749 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10024259 [exp] 334 / 2e-108 AT3G24503 745 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10029166 [exp] 333 / 2e-107 AT1G23800 886 / 0.0 aldehyde dehydrogenase 2B7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G075600 [exp] 840 / 0 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.015G070600 [exp] 834 / 0 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.012G078700 [exp] 344 / 7e-112 AT3G48000 872 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.015G074100 [exp] 342 / 5e-111 AT3G48000 885 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.002G189900 [exp] 337 / 3e-109 AT1G23800 899 / 0.0 aldehyde dehydrogenase 2B7 (.1) Potri.018G075000 [exp] 336 / 3e-109 AT3G24503 751 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Potri.010G174000 [exp] 303 / 3e-96 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.008G106000 [exp] 209 / 6e-60 AT3G66658 1049 / 0.0 aldehyde dehydrogenase 22A1 (.1.2) Potri.006G186800 [exp] 182 / 9e-51 AT2G24270 951 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Potri.018G109700 [exp] 181 / 2e-50 AT2G24270 950 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10034115 pacid=23154833 polypeptide=Lus10034115 locus=Lus10034115.g ID=Lus10034115.BGIv1.0 annot-version=v1.0 ATGGCAGCAGCAAACGGCGGGTCGTATGGAACATCGTGGGCGGACCAGTGGGATTCCGGGCCTGACCCTGTTTACCAACCCGCCCCCAAAGACAACGGCG GGGGGAAGTACAAGCAGAAGGTGGGAGAAGGGCTGGGGAAAACGAAGTCGGCGGCGGTGACCGGAATGAAGAAGGTCAAACAAGGAACTTCGGTCGGGTT CCAGTGGCTCAAAGACAAGTACCACAACTCTACATCGACGGCGACTGGAGGAACCCCGCCTTCAACAAACGCATCCACCAACCGCCCCCCATCATACACC CCCGCCACTGAACAGATCGTCGGTGATATCCCAGCAGCTACAGCGGAAGATGTGGAGCTTGCAGTGGAAGCAGCTCAAAAAGCTTTCAATCGGAACAAAG GCAAAGATTGGGCCTTTGCCTCTGGGGCTTTCCGCGCAAAGTACCTGCGTGCTATTGCTGCTAAGGTGGTAGAGAAGAAAGCATTGCTAGCAAAACTTGA ATCAATTGATTCTGGAAAACCTTACGATGAAGCAGCATGGGACATGGATGATGTTGCCGGGTGCTTCGACTACTATGCTGACCTAGCAGAAGGTCTAGAC TCGAAGCAGAAGGCTCCTATTTCCCTTCCAATGGAAACATTCAAGTCTCATGTTCTTCAAGAACCACTTGGAGTCGTTGCATTGATCACTCCCTGGAATT ACCCTTTGTTGATGGCTTCTTGGAAAGTAGCTCCTGCTTTGGCTGCTGGGTGCACTGCGATACTGAAGCCATCTGAGCTGTCATCACTTACCTGCTTGGA GCTTGCTGCAATTTGTCGAGAAGTTGGCCTTCCTAGTGGCGTGCTCAATGTTCTTACAGGATTGGGTACGGATGCTGGTGCTCCTTTGGCAGCTCATCCC AATGTTGACAAGGTTGCATTCACGGGAAGCACAGCCACTGGCAGTCGAATAATGACTTCTGCGGCACAACTAGTGAAGCCTGTTTCTATGGAGCTCGGTG GAAAGAGCCCAATTGTTGTGTTTGAGGATGTGGATCTTGATACAGCTGCTGAATGGACCGCCTTTGGATGCTTCTGGACGAATGGACAGATCTGCAGTGC TACATCCCGTCTTCTTGTACATGAAAGCATAGCTGCTAAATTCCTTGACAGGCTTGTCAAATGGGTGAAAAACATCAAAATATCAGATCCCTTTGAAGAG GGTTGTAGGCTTGGTCCAGTTGTCAGTGGAGGGCAGTACGAGAAAGTTCTAAAATTTATCTCAACCGCTAAAAGAGAAGGTGCCACTATTTTGACTGGTG GTGCTCGCCCAAAGCATTTGAACAAGGGATTCTTCATCGAACCGACTATCATAAGTGATGTAACCACCTCCATGCAAATCTGGAGAGAGGAAGTATTTGG CCCTGTTCTATGCGTAAAAACATTTAGCAGTGAAGATGAAGCCATTGAATTGGCTAATGACACCCAATATGGCTTGGCTGCTGCTGTGATCTCCAACGAT GAGGAGAGGTGTGATCGTGTAAGCAAGGCTATCCGGGCTGGTATTGTGTGGGTGAACTGCTCGCAGCCATGTTTCTGCCAAGCACCTTGGGGTGGACTCA AGCGTAGTGGGTTTGGACGCGAACTAGGAGAATGGGGACTGAACAACTACTTGAGTGTGAAGCAAGTAACGAAATACATCTCCAGAGATGCGTGGGGATG GTACAAATCTCCATCCAAGCTGTAA
AA sequence Show only first row Show all	>Lus10034115 pacid=23154833 polypeptide=Lus10034115 locus=Lus10034115.g ID=Lus10034115.BGIv1.0 annot-version=v1.0 MAAANGGSYGTSWADQWDSGPDPVYQPAPKDNGGGKYKQKVGEGLGKTKSAAVTGMKKVKQGTSVGFQWLKDKYHNSTSTATGGTPPSTNASTNRPPSYT PATEQIVGDIPAATAEDVELAVEAAQKAFNRNKGKDWAFASGAFRAKYLRAIAAKVVEKKALLAKLESIDSGKPYDEAAWDMDDVAGCFDYYADLAEGLD SKQKAPISLPMETFKSHVLQEPLGVVALITPWNYPLLMASWKVAPALAAGCTAILKPSELSSLTCLELAAICREVGLPSGVLNVLTGLGTDAGAPLAAHP NVDKVAFTGSTATGSRIMTSAAQLVKPVSMELGGKSPIVVFEDVDLDTAAEWTAFGCFWTNGQICSATSRLLVHESIAAKFLDRLVKWVKNIKISDPFEE GCRLGPVVSGGQYEKVLKFISTAKREGATILTGGARPKHLNKGFFIEPTIISDVTTSMQIWREEVFGPVLCVKTFSSEDEAIELANDTQYGLAAAVISND EERCDRVSKAIRAGIVWVNCSQPCFCQAPWGGLKRSGFGRELGEWGLNNYLSVKQVTKYISRDAWGWYKSPSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48170		ALDH10A9	aldehyde dehydrogenase 10A9 (....		Lus10034115 [exp]	0	1
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10000225 [exp]	2.4	0.8538
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Lus10011861 [exp]	3.7	0.8221
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10040620 [exp]	10.2	0.8114
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10018408 [exp]	10.8	0.7978
AT4G24160			alpha/beta-Hydrolases superfam...		Lus10024310 [exp]	16.5	0.8033
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10007656 [exp]	17.1	0.8184
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Lus10029747 [exp]	18.8	0.7947
AT2G30440		Plsp2B, TPP	plastidic type I signal peptid...		Lus10011671 [exp]	20.6	0.8031
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10035419 [exp]	22.9	0.7960
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Lus10022747 [exp]	26.3	0.8012

Compare expression of checked genes

Lus10034115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.