Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13690 933 / 0 NAGLU, CYL1 N-ACETYL-GLUCOSAMINIDASE, CYCLOPS 1, alpha-N-acetylglucosaminidase family / NAGLU family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043468 [exp] 1521 / 0 AT5G13690 997 / 0.0 N-ACETYL-GLUCOSAMINIDASE, CYCLOPS 1, alpha-N-acetylglucosaminidase family / NAGLU family (.1) Lus10039598 [exp] 964 / 0 AT5G13690 1173 / 0.0 N-ACETYL-GLUCOSAMINIDASE, CYCLOPS 1, alpha-N-acetylglucosaminidase family / NAGLU family (.1) Lus10029494 [exp] 963 / 0 AT5G13690 1174 / 0.0 N-ACETYL-GLUCOSAMINIDASE, CYCLOPS 1, alpha-N-acetylglucosaminidase family / NAGLU family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G075932 [exp] 1256 / 0 AT5G13690 1020 / 0.0 N-ACETYL-GLUCOSAMINIDASE, CYCLOPS 1, alpha-N-acetylglucosaminidase family / NAGLU family (.1) Potri.009G058100 [exp] 969 / 0 AT5G13690 1208 / 0.0 N-ACETYL-GLUCOSAMINIDASE, CYCLOPS 1, alpha-N-acetylglucosaminidase family / NAGLU family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF05089 [flax] [poplar] NAGLU Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain
Representative CDS sequence Show only first row Show all	>Lus10034116 pacid=23154692 polypeptide=Lus10034116 locus=Lus10034116.g ID=Lus10034116.BGIv1.0 annot-version=v1.0 ATGGCCTCCCCCACTCCGCCACCGCCGCTGCTATTTCTACTCACCGTTTTCTTCTTGCTCTTATCCTGTATCTTGCCGCTCAGCCGATTGGCGGACGCGA TCGGAGTCGATTCAATTTCGCGCCTTCTTGAAATTCAGGACCGCGAGCGGGCTTCTCCTTCACTCCAGGTAGCTGCTGCTCGAGGCGTTCTTCATCGCCT GCTTCCTTCTCACACTTCCAGCTTTGAGTTCCGAATTGTCTCTGAGGAGAAATGTGGAGGAAAGTCGTGCTTCATTATCTCGAACCATCCATATTCCGCC AGACATGGCGCGCCGGATATTATGATATATGGGGTCACCGGAGTGGAAATAGTAGCTGGTCTGCATTGGTATTTGAAGTACTGGTGTGGTGCACACATCT CTTGGGAGAAAACTGGAGGTGCTCAGTTGAATTCAGTGCCGAGGTCGGGCTCTCTTCCCCGTGTGCACGATGATGGCGTCTTGGTTCAGAGACCCGTTCC TTGGAATTATTACCAGAATGCTGTTAGTTCTAGCTATACTTTCGCTTGGTGGGACTGGCAAAGATGGGAGAAAGAAATTGATTGGATGGCCCTCCACGGC ATCAACCTACCGTTAGCATTTACTGGGCAAGAAGCTATTTGGCAAAAAGTTTTCCAGAAATTCAATATCACCAAAGCCGGTCTGGATGACTTTTTTGGAG GTCCAGCATTTCTCGCTTGGTCGCGGATGGCAAATCTTCATGGATGGGGTGGACCACTTCCACAAAGCTGGTTGGACAAGCAATTGGTAATGCAGAAAAA AATCCTTGCTAGAATGTATGAGCTTGGGATGACTCCAGTCCTTCCAGCATTCTCTGGAAACGTCCCGGCTGCTTTAATAGAGCTATTTCCATCAGCAAAG ATAACTCGTTTAGGCAATTGGTTTTCTGTTGAGAGCAACCCAAGATGGTGTTGCACATATCTTCTTGATGCAACAGATCCCTTATTTATTGAAATTGGAA AAGCATTCATTGAGGAACAACTAAAAGAGTACGGAAGAACAAGCCACATATACAACTGCGACACATTTGATGAGAATACGCCACCAGTTGATGACCCAGA GTATGTCTCTTCACTTGGCGCAGCAACCTTTAAGGGAATGCAAGCTGGTGACAAGGATGCCATTTGGCTCATGCAGGGGTGGCTATTTGCTTATGATGAT TTCTGGAAGCCACCACAAATGAAGGTTGTTCCCATTATGTCAGGCTTTTGTGTTAATGTTCTCAAACGTTTATGGATAGACTTGAGAAATTCATCACGGA ATTTTTGTAGTCTAGATTGTGAGCCCATGAACAAGGAGATTGTGGGCGATAGAGTTGCACATTTCTGTATTTACATTGATTTTCATGCACTTCTACATTC TGTACCCCTTGGGCGGCTTGTAGTTCTTGATCTGTATGCTGAAGTGAAACCCATATGGAGTGCTTCTGAGCAATTCTACGGTGTTCCTTACATTTGGTGT ATGCTACATAATTTTGCAGGAAATGTAGAGATGTATGGAGTTTTGGATTCAGTAGCTTCTGGACCAGTTGAAGCTCGTCTTATATCTCTTGTGTTTCAAC TAACTGCATTTTATTATCTTCCTACGTTGAAGGTTGGTGTTGGGATGTCAATGGAAGGTATAGAACAAAACCCTATCGTGTATGATCTCATGTCCGAAAT GGCATTTCAGCATAACAAAGTTGATGTGAAGGCTTGGATTGATCTCTATGCTACAAGACGTTATGGTCAACCAGTTCCTTTAATACAAGATGCTTGGAAT GTACTATATCACACAGTTTACAACTGTACTGATGGTGCCTATGACAAAAATAGAGATGTTATTGTGGCATTTCCTGATGTTGATCCTTCCTTAATTTCAA CACCGCTGGAGAAATACCTGGATGATGCCAAGCCGGCCCTAAGAATATCAATTTTACAGCAAGGTTCGGGTTTATATGAGCAGCCCCATCTCTGGTATTC AACTTTAGAAGTTGTGCATGCATTAAAGCTTTTCATCAGCTCCGGTGGTGATTTATCTGGAAGTAATACCTTCAGGTATGACCTAGTCGATTTGACAAGG CAAGCTTTGGCAAAATACGCAAATGCACTGTTTCTAAAAATAACTAAAGCATACGAGTCGAAGGATGTGAATGGAGTAGCTGAGCAATCTCGCAAGTTTG TGGAGCTTGTGGAAGACATGGACTCCCTACTATCATGTCATGAAGGGTTTCTTCTTGGACCTTGGTTAGAGAGTGCAAAGCAGCTTGCAGAAGATGAAGA ACAAGAGAAACAGTTCGAGTGGAACGCAAGGACACAAATAACGATGTGGTATGACAACACCGAAGAGGAAGCAAGTCTTCTTCGTGACTACGGGAACAAG TATTGGAGTGGGTTGGTGCGAGACTACTACGGACAAAGGGCAGCAATATATTTCAAGTACTTGTTGGAGAGCTTGGAGAATGACCATGGTTTCCGGCTCA AGGAGTGGCGGAGAGAGTGGATCAAGCTGACCAACCAGTGCAACCAGTGGCAGACCAGCCGGAAGAAATTTCCCGTAGCAAGTAACGGAGATGCACTTCT CTTGTCAACGCGGCTCTACGAGAAGTACTTGAAGGATTCTTCTGCAGGCAATGCACATTATTATGATGACGAGTAA
AA sequence Show only first row Show all	>Lus10034116 pacid=23154692 polypeptide=Lus10034116 locus=Lus10034116.g ID=Lus10034116.BGIv1.0 annot-version=v1.0 MASPTPPPPLLFLLTVFFLLLSCILPLSRLADAIGVDSISRLLEIQDRERASPSLQVAAARGVLHRLLPSHTSSFEFRIVSEEKCGGKSCFIISNHPYSA RHGAPDIMIYGVTGVEIVAGLHWYLKYWCGAHISWEKTGGAQLNSVPRSGSLPRVHDDGVLVQRPVPWNYYQNAVSSSYTFAWWDWQRWEKEIDWMALHG INLPLAFTGQEAIWQKVFQKFNITKAGLDDFFGGPAFLAWSRMANLHGWGGPLPQSWLDKQLVMQKKILARMYELGMTPVLPAFSGNVPAALIELFPSAK ITRLGNWFSVESNPRWCCTYLLDATDPLFIEIGKAFIEEQLKEYGRTSHIYNCDTFDENTPPVDDPEYVSSLGAATFKGMQAGDKDAIWLMQGWLFAYDD FWKPPQMKVVPIMSGFCVNVLKRLWIDLRNSSRNFCSLDCEPMNKEIVGDRVAHFCIYIDFHALLHSVPLGRLVVLDLYAEVKPIWSASEQFYGVPYIWC MLHNFAGNVEMYGVLDSVASGPVEARLISLVFQLTAFYYLPTLKVGVGMSMEGIEQNPIVYDLMSEMAFQHNKVDVKAWIDLYATRRYGQPVPLIQDAWN VLYHTVYNCTDGAYDKNRDVIVAFPDVDPSLISTPLEKYLDDAKPALRISILQQGSGLYEQPHLWYSTLEVVHALKLFISSGGDLSGSNTFRYDLVDLTR QALAKYANALFLKITKAYESKDVNGVAEQSRKFVELVEDMDSLLSCHEGFLLGPWLESAKQLAEDEEQEKQFEWNARTQITMWYDNTEEEASLLRDYGNK YWSGLVRDYYGQRAAIYFKYLLESLENDHGFRLKEWRREWIKLTNQCNQWQTSRKKFPVASNGDALLLSTRLYEKYLKDSSAGNAHYYDDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10034116 [exp]	0	1
AT5G58100			unknown protein		Lus10027581 [exp]	7.3	0.8190
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10016881 [exp]	13.6	0.8158
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10017331 [exp]	15.2	0.7963
AT1G19110			inter-alpha-trypsin inhibitor ...		Lus10039919 [exp]	15.5	0.6822
AT5G20930		TSL	TOUSLED, Protein kinase superf...		Lus10036170 [exp]	17.2	0.7581
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001836 [exp]	18.5	0.7957
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10015887 [exp]	19.1	0.8042
AT5G26760			unknown protein		Lus10005906 [exp]	20.3	0.8068
AT2G03667			Asparagine synthase family pro...		Lus10004643 [exp]	21.2	0.7805
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Lus10036018 [exp]	21.9	0.8027

Compare expression of checked genes

Lus10034116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.