Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50120 390 / 2e-134 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 368 / 3e-125 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 293 / 9e-96 Transducin/WD40 repeat-like superfamily protein (.1) AT2G26490 263 / 2e-83 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 242 / 3e-75 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18950 238 / 8e-74 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49450 234 / 2e-72 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 226 / 9e-71 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34380 229 / 4e-70 Transducin/WD40 repeat-like superfamily protein (.1) AT3G51930 219 / 2e-67 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043466 [exp] 740 / 0 AT5G50120 399 / 3e-136 Transducin/WD40 repeat-like superfamily protein (.1) Lus10029206 [exp] 312 / 8e-103 AT1G24130 353 / 5e-119 Transducin/WD40 repeat-like superfamily protein (.1) Lus10036881 [exp] 285 / 1e-92 AT1G24530 409 / 5e-141 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011402 [exp] 269 / 1e-86 AT1G24530 406 / 3e-140 Transducin/WD40 repeat-like superfamily protein (.1) Lus10006460 [exp] 266 / 2e-85 AT1G24530 414 / 3e-143 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011655 [exp] 262 / 1e-83 AT2G26490 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016289 [exp] 259 / 2e-82 AT2G26490 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032868 [exp] 252 / 2e-79 AT2G26490 580 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022475 [exp] 246 / 3e-77 AT3G50390 536 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G076000 [exp] 504 / 6e-179 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G070900 [exp] 504 / 6e-179 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G050900 [exp] 313 / 2e-103 AT1G24530 483 / 5e-170 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G109500 [exp] 268 / 2e-85 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 261 / 4e-83 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 253 / 1e-79 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G131100 [exp] 249 / 1e-77 AT3G50390 535 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G130400 [exp] 248 / 1e-77 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G035100 [exp] 239 / 2e-74 AT3G50390 514 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G202700 [exp] 228 / 1e-70 AT3G51930 531 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10034117 pacid=23154855 polypeptide=Lus10034117 locus=Lus10034117.g ID=Lus10034117.BGIv1.0 annot-version=v1.0 ATGGGGCTCACCTCCGGCCACCACCATCCAAGTCACTCTGGAGGAAACGAGTCGTCGGACTCGTCTGATGACCACCATCTCCAAACTCATTCATCTCTTC GTTCACAACTTAGCCTTCCAACAGTTCCATCTCTGACCTCACACCACCCTTATAACTACTTCCTCTCCAACTACTTACCCTACCACTGCCTAAACACTCT TAAAGGCCATACATCCTACGTATGCTCCCTCACCATCGCCGGAAACTTCCTATACAGCGGCTCATCAGACACTGAAATCCGGTCGTGGAGACTAGACACG CCGGATGATCATGACAACAACGTTGTAGCTCAAGGAAAGGGAGCTGTTAAGTCATTGGTGGTCTTGGAAGACAAGCTGTTCAGTGCTCATCAAGATCACA AGATCCGGGTTTGGAAAACCAGCCACAACCATAAGTCCCAACGTCTGGCTACTTTGCCAACGCTAGGTGACCGTGCTACGAAGATCCTGTCGCCCGGGAA TCAGGTTCAGGTACGGAGGCACAAGACATCGACATGGGTTCACCATGTCGATACAGTTGCAGCACTGGCTGTATCGAGTGACGAGTCGCTCCTCTACTCG GTTTCATGGGACAGGACACTGAAGATATGGAGAACGAGCGACTTCAAATGCCTAGAATCGGTAACCAATGCACACGACGATGCAATCAACGCGGTAGCAT CATCGTCATCATCGCTGGATGGAGAAGTAGTGTATACAGGATCAGCAGACAAGAAAATTAAGGTGTGGAAGAACCAAGGAAGAGGAGGAGAGAACAATAA AAGGGGAAAGTATTCACTTGTGGAGACACTTGAGAAACACAATTCAGGGATCAACGCATTGGCTCTCAGCCAAGACGGCTCTGTTCTCTACTCGGGTGCC TGCGACAGATCGATTCTGGTGTGGGCGAAGAACGAAGAAGGGAGCTTGGTGGTGATGGGAGCACTTAGAGGGCATACAGAGTCGATCCTCTGCTTGTTCG TTGTGTCTGATTTGGTATGCAGTGGTTCTGCAGACAAGACTGTTAGAGTTTGGAGAGGAGTAGAAGGGAAATACTCATGTCTGTCAGTTTTAGAAGGACA TGGAGGACCCATCAAGTGCTTGACTGCAACAGTCGATCGTTGCAATTCGTTGGAGGAATCCTATCATGTCTATAGTGGGAGTTTGGACTGTGATATCAAG GTGTGGCAGATTAGCGTCCCTGTTCTCTGA
AA sequence Show only first row Show all	>Lus10034117 pacid=23154855 polypeptide=Lus10034117 locus=Lus10034117.g ID=Lus10034117.BGIv1.0 annot-version=v1.0 MGLTSGHHHPSHSGGNESSDSSDDHHLQTHSSLRSQLSLPTVPSLTSHHPYNYFLSNYLPYHCLNTLKGHTSYVCSLTIAGNFLYSGSSDTEIRSWRLDT PDDHDNNVVAQGKGAVKSLVVLEDKLFSAHQDHKIRVWKTSHNHKSQRLATLPTLGDRATKILSPGNQVQVRRHKTSTWVHHVDTVAALAVSSDESLLYS VSWDRTLKIWRTSDFKCLESVTNAHDDAINAVASSSSSLDGEVVYTGSADKKIKVWKNQGRGGENNKRGKYSLVETLEKHNSGINALALSQDGSVLYSGA CDRSILVWAKNEEGSLVVMGALRGHTESILCLFVVSDLVCSGSADKTVRVWRGVEGKYSCLSVLEGHGGPIKCLTATVDRCNSLEESYHVYSGSLDCDIK VWQISVPVL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50120			Transducin/WD40 repeat-like su...		Lus10034117 [exp]	0	1
AT2G16060		ATGLB1, ARATHGL...	CLASS I HEMOGLOBIN, hemoglobin...		Lus10005467 [exp]	9.7	0.9100
AT2G38310		RCAR10, PYL4	regulatory components of ABA r...		Lus10007530 [exp]	22.0	0.8977
AT5G51105			Protein of unknown function (D...		Lus10019552 [exp]	46.9	0.8773
AT5G37830		OXP1	oxoprolinase 1 (.1)		Lus10024411 [exp]	59.1	0.8621
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Lus10008037 [exp]	59.5	0.8602
AT2G03800		GEK1	GEKO1, D-aminoacyl-tRNA deacyl...		Lus10036828 [exp]	61.4	0.8789
AT4G36480		FBR11, EMB2779,...	FUMONISIN B1 RESISTANT 11, EMB...		Lus10005205 [exp]	72.5	0.8390
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Lus10036011 [exp]	92.2	0.8422
AT4G40050			Protein of unknown function (D...		Lus10012756 [exp]	107.2	0.8536
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10038122 [exp]	109.0	0.8639

Compare expression of checked genes

Lus10034117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.