Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50110 172 / 3e-53 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043465 [exp] 331 / 2e-115 AT5G50110 352 / 8e-123 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G076100 [exp] 212 / 1e-68 AT5G50110 377 / 1e-132 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G071001 [exp] 54 / 8e-10 AT5G50110 76 / 2e-18 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02527 [flax] [poplar] GidB rRNA small subunit methyltransferase G
Representative CDS sequence Show only first row Show all	>Lus10034118 pacid=23154761 polypeptide=Lus10034118 locus=Lus10034118.g ID=Lus10034118.BGIv1.0 annot-version=v1.0 ATGATGTTGATTGGGCGGTATAGGCCTTGCACCGTCTCCTTTCTATTTCCTCCCTGGATTTTCCTCCAACACCTTCCCAACCCAACTTGCGTACCACTTC GTCCTGCCGGATGTCAGGCTAAATCAGTGACTGCCGCCGGAATTCACAGCTCTTCGGATTTTGACACGCTAAATTGCCGCCAGCAAGACCAGATTAGACT CTACGTTGATGCTCTTCTCCAGTGGAACCAGAAGATGAATCTCACTGCAGTTACAGAGGTGGAAGATGTCATGTCTAGGCATGTTGAGGACTCGCTTGCA CTTATCCCTCCGATTATCAGCTCTTACACTTCACATTGCAGTGGTTCAGTTGATAGCCTGAGTGTTGTTGATGTTGGCACAGGCCCCGGACTTCCTGGAA TGGTCTTGGCTATCGCTTGTCCAGATAGTGATTTGCATTCTCTTGCTATGGGACAGAACTTGGGGCAGGATGTTTCTTATAGAGAACAGTTTGATGTTGC AGTGGCCAGAGCAGTTGCAGAAATGAGAATTCTAGTAAAATCACACAGTCGGCATGGACAGAGGACTGCTATTATATGCTTAAAGGGTCGATCTACGCCT AAGAAATACCCGCGTGAGCCAGGTACTCCTGCAAAGTTGCCGTTGTGA
AA sequence Show only first row Show all	>Lus10034118 pacid=23154761 polypeptide=Lus10034118 locus=Lus10034118.g ID=Lus10034118.BGIv1.0 annot-version=v1.0 MMLIGRYRPCTVSFLFPPWIFLQHLPNPTCVPLRPAGCQAKSVTAAGIHSSSDFDTLNCRQQDQIRLYVDALLQWNQKMNLTAVTEVEDVMSRHVEDSLA LIPPIISSYTSHCSGSVDSLSVVDVGTGPGLPGMVLAIACPDSDLHSLAMGQNLGQDVSYREQFDVAVARAVAEMRILVKSHSRHGQRTAIICLKGRSTP KKYPREPGTPAKLPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50110			S-adenosyl-L-methionine-depend...		Lus10034118 [exp]	0	1
AT1G29880			glycyl-tRNA synthetase / glyci...		Lus10042096 [exp]	7.7	0.7170
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10018651 [exp]	8.7	0.7698
AT5G14210			Leucine-rich repeat protein ki...		Lus10022340 [exp]	32.5	0.7029
AT4G05160			AMP-dependent synthetase and l...		Lus10027377 [exp]	32.7	0.6960
AT2G38580			Mitochondrial ATP synthase D c...		Lus10021384 [exp]	33.3	0.7048
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Lus10041083 [exp]	34.3	0.7157
AT3G62060			Pectinacetylesterase family pr...		Lus10009966 [exp]	41.0	0.6999
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10036584 [exp]	46.8	0.6395
AT1G07480			Transcription factor IIA, alph...		Lus10004981 [exp]	52.8	0.6459
AT4G01220		MGP4	male gametophyte defective 4, ...		Lus10012650 [exp]	55.9	0.6785

Compare expression of checked genes

Lus10034118 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.