Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65200 426 / 8e-144 ATPUB38 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) AT5G40140 341 / 1e-110 RING/U-box superfamily protein with ARM repeat domain (.1) AT5G62560 291 / 4e-91 PUB41 RING/U-box superfamily protein with ARM repeat domain (.1) AT3G47820 280 / 8e-88 PUB39 PLANT U-BOX 39 (.1) AT2G23140 105 / 1e-23 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT3G46510 104 / 3e-23 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT2G28830 100 / 1e-21 AtPUB12 PLANT U-BOX 12 (.1) AT5G42340 92 / 2e-19 PUB15 Plant U-Box 15 (.1) AT1G71020 87 / 7e-18 ARM repeat superfamily protein (.1.2) AT3G54850 86 / 2e-17 ATPUB14 plant U-box 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043464 [exp] 837 / 0 AT5G65200 557 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) Lus10039447 [exp] 239 / 4e-71 AT5G40140 434 / 1e-146 RING/U-box superfamily protein with ARM repeat domain (.1) Lus10039470 [exp] 102 / 1e-22 AT5G40140 438 / 3e-148 RING/U-box superfamily protein with ARM repeat domain (.1) Lus10016565 [exp] 102 / 1e-22 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10012260 [exp] 102 / 2e-22 AT5G42340 695 / 0.0 Plant U-Box 15 (.1) Lus10016016 [exp] 101 / 3e-22 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10040834 [exp] 100 / 6e-22 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10019308 [exp] 100 / 2e-21 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011514 [exp] 99 / 2e-21 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G071200 [exp] 545 / 0 AT5G65200 536 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) Potri.012G076400 [exp] 512 / 5e-177 AT5G65200 469 / 2e-160 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) Potri.017G073400 [exp] 244 / 3e-75 AT5G40140 328 / 9e-108 RING/U-box superfamily protein with ARM repeat domain (.1) Potri.009G029600 [exp] 109 / 5e-25 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.001G238500 [exp] 107 / 3e-24 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.004G205000 [exp] 105 / 2e-23 AT5G42340 654 / 0.0 Plant U-Box 15 (.1) Potri.010G113900 [exp] 100 / 4e-22 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.007G051000 [exp] 96 / 2e-20 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.008G128600 [exp] 96 / 2e-20 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.005G144700 [exp] 96 / 2e-20 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10034119 pacid=23154740 polypeptide=Lus10034119 locus=Lus10034119.g ID=Lus10034119.BGIv1.0 annot-version=v1.0 ATGGGCGGTAATGGAAAGCACCACCGTTGGAGAATCTCCTTTCACCACCACCGTCCTAAACCATCATCCCAACCTCCCTCCGAATTCATCTGCCCCATTT CCGGCACCTTGATGTACGACCCTGTCGTTGTCTCTTCCGGCCAGACCTTCGAGCGCGTCTCCGTTCAGGTCTGCCTTGACCTCGGCTTCGTCCCTGTTCT GGAAGATAACTCTTTTCCCGATTTGACCGCTGTTATCGCCAATACCGCATTCAAGAAGACCATTCTCAGCTGGTGCGACAAGTCCTGCGCCCCGCACCCT CAGCCGCCGGATTACTTCTCCGTCGAGAAAATCATGCGGGCCAAAATGATGGAGCAGCAGTCGTCTGCGTCGTCGTCTGTTGAGAGCGTGAATCCGGATC TTAGGGTGTCTGAGAGGGAGCTTCTCAAGGCTGTGGCGGAGAATCCTCATGTTCTGTTCTCCCACGCGGCTACAGAGGTGAGTCCTCGAGTTAATCATTT CTACTCCACCTCCTCAGATGAATCTGTGATTGTCGACGGCGCCGGTGGAGGAGGAGCTGCTAGTCCCCTGACGCCGCTTCCCCTCGCTACCAAGCCAGCT TGCTACTCTCCCCCAACGTCTTCGAATAATTCCTCCGAGATAGCAACCGAGTTCGAAAACCTAACCCTAATTCAGACTCCGAGCTCCACGAATTCCGATT CGAATTTTTCAATTCCAGAGGAGGCCGAGATCGTGGCGAAGCTGAAGAGCCCGGAAGTTCACGAGCAGGAACAAGGCGTGATTTCGCTGAGGAAACTGAC CAGAACTAGAGACGAAATCAGAGGCTCTATATGTACGCCCCGGCTACTCTCGGCTCTCCGCAGCGCCATCGCGTCAAGGTACAGCATACTGCAGACCAAC GCCATGGCTTCGCTGGTGAATCTCTCCCTGGAGAAACCTAACAAGGTGAAGATCGTGAGGTCCGGATTCGTCCCCTTGCTGATCGATCTGCTGAAAGGAG GATCCAGCGAGTCACAGGAGCACGCCGCGGGAGCGCTCTTCAGCTTAGCGCTGGAAGACGAGAACAAGATGGCCATCGGAGTTCTCGGGGCATTGCAGCC GCTGATGTACGCACTGCGATCTGAAAGCGAGCGGACGCGGATGGACTCAGCTCTGGCGTTGTACCACTTGACACTAATCCAGAGCAACCGAGTGAAGCTG GTGAAACTAGGAGCAGTCCCGACGCTGTTGAGCTTGGTGAAGCTGAGCGGACTGTCGAGCAGGCTGCTGCTAGTGCTGTGCAACCTGGCCGTGTGCGGGG AAGGAAGGTCGGCAATGCTGGACGGGAATGCGGTCGCTATACTGGTGGGAATGCTGAGGGAAGGTAGTGAAGGTGGGGATGCGGAGAACTGCGTGGCGGC GCTGTACGCCCTGAGCCAGGGGAGCTTGAGGTTCAAGGGGCTGGCGAAGGAGGCGAGGGCAGGAGAGGTGTTGAGAGAAGTGGAAGAGAGAGGGAGCGAG CGGGGAAGAGAGAAGGCGAGGAGGATAATGCAGATGATGAAGGGAAGAGGGGAGGACGATGACGAGGAGTCGTCGGAGGTTGATTGGGATGAGATACTGG AATCAGGTGGATTGAGTCGGAGTCGGTACAGAGGAATGCCTGCTGCCGGCGGGAGAAAGGTTCATGCTCCGAATTCGAGTGAGTTTTGA
AA sequence Show only first row Show all	>Lus10034119 pacid=23154740 polypeptide=Lus10034119 locus=Lus10034119.g ID=Lus10034119.BGIv1.0 annot-version=v1.0 MGGNGKHHRWRISFHHHRPKPSSQPPSEFICPISGTLMYDPVVVSSGQTFERVSVQVCLDLGFVPVLEDNSFPDLTAVIANTAFKKTILSWCDKSCAPHP QPPDYFSVEKIMRAKMMEQQSSASSSVESVNPDLRVSERELLKAVAENPHVLFSHAATEVSPRVNHFYSTSSDESVIVDGAGGGGAASPLTPLPLATKPA CYSPPTSSNNSSEIATEFENLTLIQTPSSTNSDSNFSIPEEAEIVAKLKSPEVHEQEQGVISLRKLTRTRDEIRGSICTPRLLSALRSAIASRYSILQTN AMASLVNLSLEKPNKVKIVRSGFVPLLIDLLKGGSSESQEHAAGALFSLALEDENKMAIGVLGALQPLMYALRSESERTRMDSALALYHLTLIQSNRVKL VKLGAVPTLLSLVKLSGLSSRLLLVLCNLAVCGEGRSAMLDGNAVAILVGMLREGSEGGDAENCVAALYALSQGSLRFKGLAKEARAGEVLREVEERGSE RGREKARRIMQMMKGRGEDDDEESSEVDWDEILESGGLSRSRYRGMPAAGGRKVHAPNSSEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65200		ATPUB38	ARABIDOPSIS THALIANA PLANT U-B...		Lus10034119 [exp]	0	1
AT3G26600		ARO4	armadillo repeat only 4 (.1)		Lus10004620 [exp]	5.3	0.8797
AT1G28200		FIP1	FH interacting protein 1 (.1)		Lus10000640 [exp]	5.8	0.8856
AT2G35658			unknown protein		Lus10011000 [exp]	14.4	0.8324
AT3G15760			unknown protein		Lus10043269 [exp]	17.7	0.8175
AT1G18390			Protein kinase superfamily pro...		Lus10029132 [exp]	22.8	0.8451
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10013806 [exp]	27.4	0.8530
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10036609 [exp]	34.5	0.8392
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10017963 [exp]	36.0	0.8288
AT1G14780			MAC/Perforin domain-containing...		Lus10037426 [exp]	42.7	0.8279
AT2G37110			PLAC8 family protein (.1)		Lus10023176 [exp]	46.1	0.8212

Compare expression of checked genes

Lus10034119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.