Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47830 334 / 6e-115 DNA glycosylase superfamily protein (.1) AT2G36490 81 / 1e-16 DML1, ROS1 REPRESSOR OF SILENCING1, demeter-like 1 (.1) AT3G10010 68 / 2e-12 DML2 demeter-like 2 (.1) AT5G04560 67 / 4e-12 DME1, DME DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) AT4G34060 65 / 3e-11 DML3 demeter-like protein 3 (.1.2) AT1G21710 47 / 1e-05 OGG1, ATOGG1 ARABIDOPSIS 8-OXOGUANINE-DNA GLYCOSYLASE 1, 8-oxoguanine-DNA glycosylase 1 (.1) AT1G05900 43 / 0.0002 ATNTH2 endonuclease III 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043463 [exp] 362 / 1e-120 AT5G62570 306 / 1e-96 Calmodulin binding protein-like (.1.2) Lus10023864 [exp] 81 / 3e-16 AT5G04560 555 / 2e-170 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Lus10035576 [exp] 79 / 9e-16 AT2G36490 832 / 0.0 REPRESSOR OF SILENCING1, demeter-like 1 (.1) Lus10027713 [exp] 76 / 8e-15 AT5G04560 913 / 0.0 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Lus10014367 [exp] 75 / 2e-14 AT5G04560 540 / 1e-164 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Lus10018137 [exp] 50 / 1e-06 AT1G21710 461 / 7e-162 ARABIDOPSIS 8-OXOGUANINE-DNA GLYCOSYLASE 1, 8-oxoguanine-DNA glycosylase 1 (.1) Lus10028539 [exp] 49 / 2e-06 AT1G21710 464 / 1e-163 ARABIDOPSIS 8-OXOGUANINE-DNA GLYCOSYLASE 1, 8-oxoguanine-DNA glycosylase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G071300 [exp] 361 / 2e-125 AT3G47830 343 / 9e-119 DNA glycosylase superfamily protein (.1) Potri.006G116000 [exp] 81 / 3e-16 AT2G36490 729 / 0.0 REPRESSOR OF SILENCING1, demeter-like 1 (.1) Potri.010G234400 [exp] 77 / 3e-15 AT5G04560 1026 / 0.0 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Potri.001G150001 [exp] 72 / 2e-13 AT5G04560 560 / 2e-171 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Potri.008G025900 [exp] 71 / 5e-13 AT5G04560 1030 / 0.0 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Potri.005G180700 [exp] 49 / 2e-06 AT1G21710 452 / 1e-159 ARABIDOPSIS 8-OXOGUANINE-DNA GLYCOSYLASE 1, 8-oxoguanine-DNA glycosylase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0198 [flax] [poplar] HHH PF00730 [flax] [poplar] HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Representative CDS sequence Show only first row Show all	>Lus10034120 pacid=23154864 polypeptide=Lus10034120 locus=Lus10034120.g ID=Lus10034120.BGIv1.0 annot-version=v1.0 ATGGCTACCCTCTCAGACTCTGGATCAGAATCAATCCCGATCGCCCAAAAGAATCCCGAACCCAAAATGCAGAAAACCCGCAAGAGAAAGCAACCTCCGC CGCAGCAGCAGCATAAGCCCCAAACAGCTCAACCCAAATTGTCGAAACCCACCACCGCCACCAAGGAACAAGAGCCATTCCCGACGCACCTCCCGCCCAC CCCTCAAGACTGCAGAGCCATTCGTGACTCCCTCCTTGCCCACCATGGCTTCCCTCTGGAGTTCGCCAAGTATCGCCGCGATAGACCAACTCGTTACCCG GATGATGACGGCTCCTCGCCAAACAATGCCATCATGCAACCGGAGGACAGTGAACAAGAGGAGAGCGTTTTGGACGGTCTGGTGAAAACCGTGCTCTCCC AGAACACCACTGAGGTTAACTCCTTGAGGGCCTTTTCCAATCTCAAATCCGCTTTTCCTTCCTGGGAAGATGTGCTTGCTGCTGAGCCAAAATCTGTCGA GAATGCAATAAGGTGTGGAGGTCTAGCTCCGAGGAAGACTTCCTGCATTTTAAACTTGCTGATCCGTCTGCTGGAGAGAAAAGGCAAGTTGTGCTTGGAA TATTTGCGGAATCTGTCTGTCGACCAAGTCAAAACCGAGCTTTCTCTCTTCAAAGGAATTGGCCCCAAAACTATATCTTGTGTTCTAATGTTCAATCTTC AGCATGATGACTTCCCAGTGGATACACATGTGTTCGAGATTGCGAAGGCCATTGGCTGGGTGCCAAGTCAGGCAGACCGGAATAAGACATACGTTCATCT TAATCAACGCATCCCTGACGATCTTAAATTTGACCTTAATTGTCTTCTGTACACTCACGGTAAGATTTGCAAAAGATGTACCAAGAAAGGGACCGACCAT AAAAGAAAGGAATCCGGTGATGTTTCTTGTCCTCTTTTAAGTTTTTGTAGCAACTTTACTGTATCTCCAGCAGACAAGTTAGAACATTCAATTCCCATAT AA
AA sequence Show only first row Show all	>Lus10034120 pacid=23154864 polypeptide=Lus10034120 locus=Lus10034120.g ID=Lus10034120.BGIv1.0 annot-version=v1.0 MATLSDSGSESIPIAQKNPEPKMQKTRKRKQPPPQQQHKPQTAQPKLSKPTTATKEQEPFPTHLPPTPQDCRAIRDSLLAHHGFPLEFAKYRRDRPTRYP DDDGSSPNNAIMQPEDSEQEESVLDGLVKTVLSQNTTEVNSLRAFSNLKSAFPSWEDVLAAEPKSVENAIRCGGLAPRKTSCILNLLIRLLERKGKLCLE YLRNLSVDQVKTELSLFKGIGPKTISCVLMFNLQHDDFPVDTHVFEIAKAIGWVPSQADRNKTYVHLNQRIPDDLKFDLNCLLYTHGKICKRCTKKGTDH KRKESGDVSCPLLSFCSNFTVSPADKLEHSIPI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47830			DNA glycosylase superfamily pr...		Lus10034120 [exp]	0	1
AT3G09950			unknown protein		Lus10039065 [exp]	7.4	0.8670
AT1G34110			Leucine-rich receptor-like pro...		Lus10000509 [exp]	21.2	0.8314
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Lus10040906 [exp]	24.1	0.7801
AT5G27870			Plant invertase/pectin methyle...		Lus10020313 [exp]	44.0	0.7533
AT5G55410			Bifunctional inhibitor/lipid-t...		Lus10016582 [exp]	44.5	0.7583
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Lus10000017 [exp]	46.7	0.6988
AT2G27410	B3		Domain of unknown function (DU...		Lus10035394 [exp]	51.5	0.7589
AT1G67325			Ran BP2/NZF zinc finger-like s...		Lus10011357 [exp]	57.6	0.7044
AT2G11890			adenylate cyclases (.1.2)		Lus10024472 [exp]	60.2	0.7520
AT3G20240			Mitochondrial substrate carrie...		Lus10034806 [exp]	63.6	0.7154

Compare expression of checked genes

Lus10034120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.