Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62570 394 / 6e-133 Calmodulin binding protein-like (.1.2) AT4G25800 331 / 1e-106 Calmodulin-binding protein (.1.2) AT5G57580 319 / 2e-101 Calmodulin-binding protein (.1) AT2G18750 298 / 9e-94 Calmodulin-binding protein (.1.2.3) AT4G31000 281 / 5e-88 Calmodulin-binding protein (.1.2) AT2G24300 281 / 1e-87 Calmodulin-binding protein (.1.2) AT1G73805 257 / 6e-80 SARD1 SAR Deficient 1, Calmodulin binding protein-like (.1) AT5G26920 251 / 1e-76 CBP60G Cam-binding protein 60-like G (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043463 [exp] 825 / 0 AT5G62570 306 / 1e-96 Calmodulin binding protein-like (.1.2) Lus10011248 [exp] 321 / 4e-102 AT5G57580 751 / 0.0 Calmodulin-binding protein (.1) Lus10018437 [exp] 318 / 3e-101 AT5G57580 746 / 0.0 Calmodulin-binding protein (.1) Lus10036301 [exp] 308 / 2e-97 AT2G24300 761 / 0.0 Calmodulin-binding protein (.1.2) Lus10019056 [exp] 307 / 5e-97 AT2G24300 761 / 0.0 Calmodulin-binding protein (.1.2) Lus10001436 [exp] 295 / 2e-92 AT5G57580 809 / 0.0 Calmodulin-binding protein (.1) Lus10001630 [exp] 295 / 3e-92 AT5G57580 811 / 0.0 Calmodulin-binding protein (.1) Lus10029861 [exp] 276 / 1e-85 AT4G25800 332 / 2e-106 Calmodulin-binding protein (.1.2) Lus10020686 [exp] 271 / 1e-83 AT4G25800 334 / 1e-106 Calmodulin-binding protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G071800 [exp] 664 / 0 AT5G62570 499 / 4e-173 Calmodulin binding protein-like (.1.2) Potri.012G077000 [exp] 657 / 0 AT5G62570 493 / 1e-170 Calmodulin binding protein-like (.1.2) Potri.004G035100 [exp] 318 / 4e-101 AT5G57580 792 / 0.0 Calmodulin-binding protein (.1) Potri.018G095300 [exp] 310 / 4e-98 AT5G57580 820 / 0.0 Calmodulin-binding protein (.1) Potri.011G043200 [exp] 308 / 2e-97 AT5G57580 752 / 0.0 Calmodulin-binding protein (.1) Potri.011G043300 [exp] 307 / 6e-97 AT5G57580 770 / 0.0 Calmodulin-binding protein (.1) Potri.018G111200 [exp] 306 / 8e-97 AT2G24300 759 / 0.0 Calmodulin-binding protein (.1.2) Potri.006G187900 [exp] 302 / 2e-95 AT2G24300 770 / 0.0 Calmodulin-binding protein (.1.2) Potri.012G054900 [exp] 294 / 3e-94 AT1G73805 407 / 1e-139 SAR Deficient 1, Calmodulin binding protein-like (.1) Potri.015G045300 [exp] 291 / 1e-92 AT1G73805 414 / 1e-141 SAR Deficient 1, Calmodulin binding protein-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07887 [flax] [poplar] Calmodulin_bind Calmodulin binding protein-like
Representative CDS sequence Show only first row Show all	>Lus10034121 pacid=23154763 polypeptide=Lus10034121 locus=Lus10034121.g ID=Lus10034121.BGIv1.0 annot-version=v1.0 ATGTCTCAGAAGAGACAGCCAGATGAAGGAGGGAAGGCTCCTGCTGCTGAGGGTGGTGCCACTCAAGAGGAGAAGCGCCGAAGATTTAACCTCAGAAAGC GAGTGAAAGAGGAAATTGAAACAGCACTGAAAAAGCACTTGATCAGCTTTGCCTGGAACAGCGGAAAGGAGAGAGGCTCTACTGAATCAAGATACGTAAA GCTACATTTGTCAAACAATCTCTCGCTTCCCATTTTTACCGGGGCTCGTATAGAAGGAGACGATTCCTCTACTTTACAAGTAGTTCTGATTGACAATCAA ACTGGGAAGGTTGTCAACTCTGGCCCTGAATCTTCAGCCAGGGTAGAAGTTGTGGTTCTTGAGGGTGATTTTGATAGTGATGAATGCTATAATTGGACAC CTGAAGAATTCAAGAACAACATTGTTAAAGAGCGAGAAGGGAAGAAACCACTTCTTTCAGGAGACGTGCTTCTGAATCTTAAAGATGGGGTTGGTTTGGT TGGTGATCTTTCGTTTTCAGATAATTCAAGCTGGACTAGAAGCAGAAAGTTCAGAATTGGAGCTAGATCTCTCGACAATTTTGATGGAGTTAGAATAATA GAAGCCAAGTCTGAATCTTTCATTGTCAGAGATCACCGAGGAGAATTATACAAGAAGCATCACCCTCCAGTTCTGTCAGATGAAGTATGGAGACTGGAAA AGATTGGTAAAGATGGAGCTTTCCACAAACGTTTGTGTCGAGAAAATATTCTTACAGTGAAGGATTTTCTCACGCACCTGTTTATAAACTCTGCAAAGCT CCGGCATATCCTTGGCACGGGTATGTCTGCGAAAATGTGGGAAGTGACTGTGGAGCATGCTCAGACATGCATACTTGATAACAGAATATATTTGTACTTC TCTCCTGGCCAACCAAAAACATCTGTGATCTTCAATATCGTGGGACAAGTTGATGCTCAGAACTTGGTCATTGCTGCATTTGGGCACTGGGATGAAGTCA TATGTTGTGAGAACGAGGCGTCTCTCATGGCTGCGTCTTCAAACTTGAACGGTATCCCCTATACTTCAAGCTCATCAACGACGGAGAATTCCAATAGCAC AAAGGCGTTGACTTTACAGAAACCAGGAGTGTTTGATTTCGTACAGCCAAGTACAAGCTCTCCTGATAAAGTGTCATCCATATATTCCAACCTAGGCGAT TATGACTTCCATGGTATTGAAAACATGGGTCTCAGATACGATCAGTCATTCAATTTTGGTAGCCAAGTCCCAAATCCACTCATCCATGAATCGGATAGCA TAACCCAAGCCTTATGTGACGATGATCATCTCAGGTTCTTTGATACTGATTTGCAGTCGCAAAACCTGTGCTTGGGATCGCCAGCTGATTTACAGAGTGC AGTTGATAGTTTTCTGCTGGCACGTTCATCAACTGCTGCCGTTCCCATCGGTAGTAAGGCTCAGAGGAGATGGGCGAAAGTATCTAGCGTGTTGAGATGG TTCTCTGTTCGGAAGCTTGTTGCGAAAAGGAATCGTGTTAGAGACATTCATGATTCAGTTGATGTCAGAAAGGTAGTTAGGAGGTGA
AA sequence Show only first row Show all	>Lus10034121 pacid=23154763 polypeptide=Lus10034121 locus=Lus10034121.g ID=Lus10034121.BGIv1.0 annot-version=v1.0 MSQKRQPDEGGKAPAAEGGATQEEKRRRFNLRKRVKEEIETALKKHLISFAWNSGKERGSTESRYVKLHLSNNLSLPIFTGARIEGDDSSTLQVVLIDNQ TGKVVNSGPESSARVEVVVLEGDFDSDECYNWTPEEFKNNIVKEREGKKPLLSGDVLLNLKDGVGLVGDLSFSDNSSWTRSRKFRIGARSLDNFDGVRII EAKSESFIVRDHRGELYKKHHPPVLSDEVWRLEKIGKDGAFHKRLCRENILTVKDFLTHLFINSAKLRHILGTGMSAKMWEVTVEHAQTCILDNRIYLYF SPGQPKTSVIFNIVGQVDAQNLVIAAFGHWDEVICCENEASLMAASSNLNGIPYTSSSSTTENSNSTKALTLQKPGVFDFVQPSTSSPDKVSSIYSNLGD YDFHGIENMGLRYDQSFNFGSQVPNPLIHESDSITQALCDDDHLRFFDTDLQSQNLCLGSPADLQSAVDSFLLARSSTAAVPIGSKAQRRWAKVSSVLRW FSVRKLVAKRNRVRDIHDSVDVRKVVRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62570			Calmodulin binding protein-lik...		Lus10034121 [exp]	0	1
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10028744 [exp]	2.2	0.9134
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10021948 [exp]	2.8	0.9378
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10041237 [exp]	3.7	0.9208
AT5G62570			Calmodulin binding protein-lik...		Lus10043463 [exp]	4.9	0.9177
AT4G31410			Protein of unknown function (D...		Lus10026950 [exp]	12.2	0.8909
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Lus10015186 [exp]	14.1	0.8979
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10036364 [exp]	14.8	0.8865
AT3G46590		ATTRP2, TRFL1	TRF-like 1 (.1.2.3)		Lus10016527 [exp]	15.2	0.9007
					Lus10034398 [exp]	16.1	0.9159
AT4G23050			PAS domain-containing protein ...		Lus10017844 [exp]	18.7	0.8938

Compare expression of checked genes

Lus10034121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.