Plant FIBer expression Database

Lus10034122 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G62575 82 / 2e-21 SDH7B, SDH7 succinate dehydrogenase 7B, succinate dehydrogenase 7, unknown protein
AT3G47833 82 / 3e-21 SDH7A, SDH7 succinate dehydrogenase 7A, succinate dehydrogenase 7, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004231
[exp]
56 / 2e-11 AT5G62575 80 / 3e-21 succinate dehydrogenase 7B, succinate dehydrogenase 7, unknown protein
Lus10042141
[exp]
0 / 1 AT5G62575 111 / 2e-32 succinate dehydrogenase 7B, succinate dehydrogenase 7, unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G072100
[exp]
88 / 1e-23 AT5G62575 131 / 4e-41 succinate dehydrogenase 7B, succinate dehydrogenase 7, unknown protein
Potri.012G077101
[exp]
86 / 9e-23 AT5G62575 131 / 2e-41 succinate dehydrogenase 7B, succinate dehydrogenase 7, unknown protein
PFAM info
Representative CDS sequence
>Lus10034122 pacid=23154756 polypeptide=Lus10034122 locus=Lus10034122.g ID=Lus10034122.BGIv1.0 annot-version=v1.0
ATGGCGTTCTTCCTGAAAAATTCAGCGCTTTCTTCTCACTTCCGTCCTCGCTCTCAGGTACCATGGGACCCAGTTTCAGTCTCTCGTCGTGGATTCCATG
TCGAGCTGGGGCAACGGGAGAAAGCTCTCTTGGCTGATGACCCAGCTATTAGAAGATTCAAATCATCCAAAAAGGGTGTGGCAAGAATTAACAAAATTGG
AGATTTTCTCACAGTTGTTGTTGTAGCAGACCGAGACATGTTAATTAGATTCTTAAGTCTCGATGAAGTAATTGCTGGAACTTGTGACCTGAGTGTCGCT
GATCTTATATGTTGCCTACCTTGTCTGATATTGGGTGCTTTGGGATTGCTGAAAGTTGTTCATAGCCAGGCAATCAAGACTAGAAATCGTGTCTGA
AA sequence
>Lus10034122 pacid=23154756 polypeptide=Lus10034122 locus=Lus10034122.g ID=Lus10034122.BGIv1.0 annot-version=v1.0
MAFFLKNSALSSHFRPRSQVPWDPVSVSRRGFHVELGQREKALLADDPAIRRFKSSKKGVARINKIGDFLTVVVVADRDMLIRFLSLDEVIAGTCDLSVA
DLICCLPCLILGALGLLKVVHSQAIKTRNRV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G62575 SDH7B, SDH7 succinate dehydrogenase 7B, su... Lus10034122
[exp]
0 1
AT1G67000 Protein kinase superfamily pro... Lus10026761
[exp]
4.2 0.7736
AT5G46030 unknown protein Lus10025438
[exp]
5.3 0.8016
AT5G12320 ankyrin repeat family protein ... Lus10036033
[exp]
7.4 0.7769
AT3G57360 unknown protein Lus10032322
[exp]
15.9 0.7204
AT5G14930 GENE101, SAG101 senescence-associated gene 101... Lus10004841
[exp]
16.0 0.7836
AT5G61310 Cytochrome c oxidase subunit V... Lus10040012
[exp]
18.7 0.7274
Lus10007186
[exp]
18.7 0.7809
AT4G36470 S-adenosyl-L-methionine-depend... Lus10028330
[exp]
25.2 0.7775
Lus10008011
[exp]
29.0 0.7632
AT4G38370 Phosphoglycerate mutase family... Lus10023935
[exp]
33.4 0.7266

Lus10034122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.