Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50090 129 / 2e-38 unknown protein AT5G62900 118 / 5e-34 unknown protein AT1G60010 118 / 6e-34 unknown protein AT1G10530 105 / 7e-29 unknown protein AT5G67620 100 / 2e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043461 [exp] 232 / 3e-78 AT5G50090 146 / 7e-45 unknown protein Lus10004229 [exp] 156 / 1e-48 AT5G50090 150 / 1e-46 unknown protein Lus10042139 [exp] 150 / 3e-46 AT5G50090 141 / 4e-43 unknown protein Lus10030651 [exp] 124 / 4e-36 AT1G60010 171 / 4e-55 unknown protein Lus10029193 [exp] 119 / 3e-34 AT1G60010 178 / 1e-57 unknown protein Lus10010708 [exp] 119 / 4e-34 AT1G60010 177 / 3e-57 unknown protein Lus10030835 [exp] 112 / 9e-32 AT1G60010 150 / 2e-47 unknown protein Lus10019264 [exp] 95 / 2e-24 AT5G67620 163 / 5e-51 unknown protein Lus10011549 [exp] 45 / 2e-05 AT5G67620 90 / 1e-20 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G072501 [exp] 170 / 6e-54 AT5G50090 152 / 4e-47 unknown protein Potri.012G077300 [exp] 155 / 3e-48 AT5G50090 168 / 1e-53 unknown protein Potri.010G095400 [exp] 127 / 3e-37 AT1G60010 187 / 5e-61 unknown protein Potri.008G146500 [exp] 126 / 3e-36 AT1G60010 189 / 3e-61 unknown protein Potri.007G005600 [exp] 105 / 1e-28 AT5G67620 184 / 7e-60 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034124 pacid=23154888 polypeptide=Lus10034124 locus=Lus10034124.g ID=Lus10034124.BGIv1.0 annot-version=v1.0 ATGGGGAATTGCCAAGCGGTGGACGCCGCGACGCTAGTGATACAGCACCCTACCGGCAAGGTAGAGAAGCTTTACTGCCCCATCACCGCTGCCCAAGTCA TGAAAACTAACCCTGGCCACTACGTCGCTCTCCTCCTCTCCACCACCCTCTATCCCGCCGCCGCCAACGATCGTACTACTCCGGTGAGCGGCGGCGGCGG AAGCAGCCCAGTGAAGCTGACGAGAATAAAGCTCCTCCGTCCGACGGATACGCTCACCCTTGGCCGCGTCTACAGGCTCATCACCAATCAAGAGGTTATG AAGGGACTGTGGGCGAAGAAGCAAGCAAAGCTCAATAAAAGCCCAGAATCACAAACTGCTGCTTCTGCTCAATCATCATCAACAACAACAACTCACCAGA AGCTGGTCCAGAAAGGCGAACGGCAGAGAAGATCAACTAGTAGGGGTGGGGGGTCAATGTCGTCATCAATTTTATCAGGAGGAGGAGGGAGTGGGAGTGG GAGATCATCAAGAACATGGCAGCCATCGTTGAACAGCATCTTGGAAACAGCCGGCAGCAACAGCAGCAGCGCCATCTGA
AA sequence Show only first row Show all	>Lus10034124 pacid=23154888 polypeptide=Lus10034124 locus=Lus10034124.g ID=Lus10034124.BGIv1.0 annot-version=v1.0 MGNCQAVDAATLVIQHPTGKVEKLYCPITAAQVMKTNPGHYVALLLSTTLYPAAANDRTTPVSGGGGSSPVKLTRIKLLRPTDTLTLGRVYRLITNQEVM KGLWAKKQAKLNKSPESQTAASAQSSSTTTTHQKLVQKGERQRRSTSRGGGSMSSSILSGGGGSGSGRSSRTWQPSLNSILETAGSNSSSAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50090			unknown protein		Lus10034124 [exp]	0	1
AT5G50090			unknown protein		Lus10043461 [exp]	5.1	0.8715
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Lus10022577 [exp]	15.3	0.8293
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Lus10018899 [exp]	16.9	0.8648
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Lus10011799 [exp]	23.0	0.8503
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Lus10000636 [exp]	23.7	0.8714
AT5G26780		SHM2	serine hydroxymethyltransferas...		Lus10028218 [exp]	25.5	0.8465
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10012797 [exp]	27.6	0.8611
AT3G23090			TPX2 (targeting protein for Xk...		Lus10021223 [exp]	32.4	0.8183
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10035909 [exp]	42.2	0.8564
AT3G19895			RING/U-box superfamily protein...		Lus10000199 [exp]	47.6	0.7922

Compare expression of checked genes

Lus10034124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.