Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04895 1817 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT1G48650 1323 / 0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT2G01130 1259 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT2G35920 821 / 0 RNA helicase family protein (.1) AT1G58060 488 / 1e-150 RNA helicase family protein (.1) AT1G58050 442 / 5e-134 RNA helicase family protein (.1) AT1G06670 270 / 4e-74 NIH nuclear DEIH-boxhelicase (.1) AT2G30800 269 / 5e-74 ATVT-1, HVT1 helicase in vascular tissue and tapetum (.1) AT4G18465 242 / 1e-67 RNA helicase family protein (.1) AT2G47250 183 / 9e-48 RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043459 [exp] 2224 / 0 AT5G04895 1897 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10007938 [exp] 1280 / 0 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10013479 [exp] 1276 / 0 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10009012 [exp] 1269 / 0 AT1G48650 1644 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10009643 [exp] 1150 / 0 AT1G48650 1469 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10009022 [exp] 756 / 0 AT2G35920 1447 / 0.0 RNA helicase family protein (.1) Lus10009660 [exp] 537 / 3e-175 AT2G35920 969 / 0.0 RNA helicase family protein (.1) Lus10001415 [exp] 288 / 6e-81 AT2G30800 1276 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10029806 [exp] 278 / 2e-77 AT2G30800 1250 / 0.0 helicase in vascular tissue and tapetum (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G014100 [exp] 1888 / 0 AT5G04895 1835 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.010G246000 [exp] 1884 / 0 AT5G04895 1862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G042500 [exp] 1325 / 0 AT1G48650 1629 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Potri.010G117800 [exp] 1313 / 0 AT2G01130 1639 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G068900 [exp] 832 / 0 AT2G35920 1474 / 0.0 RNA helicase family protein (.1) Potri.004G222900 [exp] 493 / 3e-152 AT1G58060 1757 / 0.0 RNA helicase family protein (.1) Potri.005G206500 [exp] 281 / 3e-78 AT2G30800 1374 / 0.0 helicase in vascular tissue and tapetum (.1) Potri.010G172500 [exp] 250 / 7e-68 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.004G052700 [exp] 220 / 3e-60 AT4G18465 1092 / 0.0 RNA helicase family protein (.1) Potri.010G057200 [exp] 200 / 1e-53 AT1G27900 1077 / 0.0 RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0196 [flax] [poplar] DSRM PF00035 [flax] [poplar] dsrm Double-stranded RNA binding motif CL0021 [flax] [poplar] OB PF07717 [flax] [poplar] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase CL0023 [flax] [poplar] PF04408 [flax] [poplar] HA2 Helicase associated domain (HA2)
Representative CDS sequence Show only first row Show all	>Lus10034126 pacid=23154712 polypeptide=Lus10034126 locus=Lus10034126.g ID=Lus10034126.BGIv1.0 annot-version=v1.0 ATGCGGAATCCCAAGCTACGTTGTTTACTCGTTGGATATAGCAACTCGCTCTACAAACTTCATCGTCCGCAACCTTGCTCCAGGCCTCTATATGGCAGCT TGATTTTCTTCCTCCCTAATCCTTCCTTATATATTAGTTCTCTCCGTCGATTCTCTGGCTACGCCGTCGAGCAATTCTCCGATGACGAGTACGAGTGCGA CTTCGAGAATCACAAGGCATCTTCTTCGGTGGCCAATATCGATGAGTGGAAATGGAAAATGAGCTTGCTCCTGCGCAGTGAGACTGACCAAGAGATTGTT TCCAAAGACAGGAAAGATAGGAGGGACTATGAGCAGATTTCCAATCTTGCTCAAAGGATGGGACTTTATAGTGAATTGTATGGGAAAGTGGTGGTTGCAA GCAAGGTTCCTCTTCCGAACTACAGGCCTGATTTAGATGACAAGCGGCCGCAAAGAGAGGTGGTTCTCCCTCTAAGCCTGAGGAGGAGGGTGGAGAGTTT GCTTCAGGAACATTTTGACAGGACTCAACTTACCTCTGGAAAAGCAGATGGCGTAACAGATGACAAACCTGCTGATCATGTTGAGATTCATAATCAAGCA GAAAATCCTAATTCTTTTATTGACGACTCTGTGGTGGAGAAAGTTCTTCAAAGGAGGAGTTTACGGTTGCGAAATATGCAGAGAGCTTGGCAGGAATCCC CTGAAGGCAGGAGGATGTTGGAATTCCGGAAGTCCCTACCTTCATTTAAGGAAAAAGAAAGACTGTTACAAGCTATAGCAAGGAATCAGGTGGTAGTAAT ATCAGGGGAAACTGGATGTGGGAAAACCACTCAGCTCCCGCAATACATATTGGAGTCTGAAATAGAGTCCGGCCGTGGAGCGTTTTGTAGTATAATCTGC ACACAGCCGAGGAGGATATCAGCTATGGCTGTTTCTGAGAGAGTATCAACAGAGAGAGGAGAGCCTCTTGGTGAATCGGTTGGTTATAAAGTTCGGCTGG AAGGTATGAAAGGGAAAAACACCCACTTGCTCTTCTGTACTAGTGGAATTCTACTTCGAAGGCTGCTAAGTGACCGCAATTTGAATGGTGTGACTCATGT TTTTGTTGATGAAATACATGAAAGGGGCATGAATGAAGATTTCCTGCCGCTTGTGCTCAAGGATCTTCTTCCCCGCCGCCGTGACTTGCGGCTGATTTTA ATGAGTGCTACTCTGAATGCCGAACTGTTTTCGACTTATTATGGAGGAGCACCAACAATTCACATACCGGGCTTTACCTATGCAGTAAAGACCCATTTCT TAGAAGATGTGCTGAACATCACCGGATATCAGTTGTCTTCTTTTAATCAAATTGATGATTATGGACAAGATAAATTGTGGAAGACTCAGAAGCAGCTGAC ACCAAGGAAAAGAAAGAATCAGATCACTGCACTTGTTGAGGATGCTCTTAATAAATCAAATTTTGAGACTTATAGCTCTAGGGTCCGTGACTCTCTGTCA AACTGGATGCCTGATTGTATAGGTTTTAACCTTATTGAGGCAGTTCTATGCCATATTTGCCGGAAGGAGCGGCCAGGTGCTGCCTTAGTATTCATGACTG GGTGGGAGGACATTAGCTCTTTAAAGGATCAGTTGAAATCTCATCCTCTTTTAGGTGATCCCAACAGGGTTCTGCTTTTAACATGCCATGGTTCTATGGC AACATCTGAACAGAAACTCATATTTGAAAGAGCACCTCCAAATATTCGTAAAATTGTACTGGCCACAAACATGGCTGAGGCGAGTATTACCATTAATGAC GTAGTTTTTGTGGTTGATTGTGGAAAAGCGAAAGAAACCACTTATGATGCTTTGAACAATACACCTTGTTTGCTTCCTTCATGGATATCCCAAGCTTCTG CCCGACAAAGAAGAGGCAGGGCTGGACGTGTACAACCAGGTGACTGTTATCACCTTTATCCGAAATGTGTTTACGAAGCTTTTGCTGAATATCAACTTCC AGAACTTCTTCGAACTCCACTTAATTCTCTATGCTTGCAAATAAAAAGTTTGCAAGTAGCAAGTATAGCGGAGTTCTTGTCAGCTGCCCTCCAGCCACCA GAACAATTGGCTGTGTACAATGCCATTGATTTCCTTAAAATGATTGGGGCCCTGGATGAAAAGGAAAACTTAACAAATCTTGGAAAATATTTATCAATCC TTCCAGTGGATCCTAAGCTTGGAAAAATGCTGATAATGGGTGCAATCTTTCGTTGCTTTGACCCAGTACTAACCATTGTATCTGGGCTTAGTGTGAGGGA TCCTTTCCTCTTGCCTCAGGACAAAAAGGAATTAGCAGGGACAGCAAAGTCTAGATTTTCAGCAAAAGATTATAGCGATCATATGGCTCTTGTCCGTGCA TATGAAGGCTGGAAGGATGCTGAAAAAGAAGGATCAGCATATGAATACTGCTGGAGGAACTTTCTTTCTGCACAAACCATGCAAGCCATTCATTCTCTGA GGAAACAGTTTAGCTTCATCCTGAAGGATGCCGGTCTTGCAGACGGAGACACAAGTGCCAATAACAAATTAAGTCACAGTCAGGAATTGGTTCGAGCAAT AATATGTGCTGGTTTGTATCCTGGCATAGCCTCAGTTGTGCACAGAGAAACATCCATGTCTTTTAAAACGATGGATGACGGCCAAGTCCTACTATATGCG AATTCCGTGAATGCACGCTACCAGACTATTCCCTACCCATGGCTTGTCTTTGGTGAAAAAGTTAAAGTCAATGCTGTTTTCATACGTGATTCAACCGGCG TCTCCGATTCCATGTTGATTCTTTTCGGTGGTGCACTTCATCGTGGGGTGCAGGGAGGACATCTAAAAATGTTGGATGGCTACGTGGATCTCTTCATGGA TCCTAATTTGGCAGACTGTTATCTGAAGCTAAAGGAAGAACTTGATAAGGTTATTCAGCAGAAGCTTGAAGATCCAAACAGTGACATTTACAAAGAAGGG AAGTATCTTATGCTTGCTGTCCAAGAAATGATATCGGGAGATCAATGTGAAGGGAGATTCGTTTTTGGACGCGAAAGCAAACGACCGAGAGAATCAAACG ATGACAGCAGATTCACGAAAGATGGGAGCAACCCAAAGAGCTTGCTACAGACTCTTCTGATGAGAGCCGGGCATTCCCCTCCAAAATACAAAACGAAGCA CCTCAAGACAAATGAGTTCAGGGCATTGGTCGAGTTCAAAGGGATGCAATTCGTAGGGAAACCAAAGAGAAACAAGCAGATTGCAGAGAGGGATGCAGCT GTCGAGGCACTTGCCTGGTTGACTCACACCTCAACTGATTACAATCAAAATGAGGACGATGCGAACAACGACTCCCAACCAGACGTCACTGACAACATGC TCAAACTACTGGGGAAACGCAGAAGATCAAAGCGTACAACTGGTTGA
AA sequence Show only first row Show all	>Lus10034126 pacid=23154712 polypeptide=Lus10034126 locus=Lus10034126.g ID=Lus10034126.BGIv1.0 annot-version=v1.0 MRNPKLRCLLVGYSNSLYKLHRPQPCSRPLYGSLIFFLPNPSLYISSLRRFSGYAVEQFSDDEYECDFENHKASSSVANIDEWKWKMSLLLRSETDQEIV SKDRKDRRDYEQISNLAQRMGLYSELYGKVVVASKVPLPNYRPDLDDKRPQREVVLPLSLRRRVESLLQEHFDRTQLTSGKADGVTDDKPADHVEIHNQA ENPNSFIDDSVVEKVLQRRSLRLRNMQRAWQESPEGRRMLEFRKSLPSFKEKERLLQAIARNQVVVISGETGCGKTTQLPQYILESEIESGRGAFCSIIC TQPRRISAMAVSERVSTERGEPLGESVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDRNLNGVTHVFVDEIHERGMNEDFLPLVLKDLLPRRRDLRLIL MSATLNAELFSTYYGGAPTIHIPGFTYAVKTHFLEDVLNITGYQLSSFNQIDDYGQDKLWKTQKQLTPRKRKNQITALVEDALNKSNFETYSSRVRDSLS NWMPDCIGFNLIEAVLCHICRKERPGAALVFMTGWEDISSLKDQLKSHPLLGDPNRVLLLTCHGSMATSEQKLIFERAPPNIRKIVLATNMAEASITIND VVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGDCYHLYPKCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVASIAEFLSAALQPP EQLAVYNAIDFLKMIGALDEKENLTNLGKYLSILPVDPKLGKMLIMGAIFRCFDPVLTIVSGLSVRDPFLLPQDKKELAGTAKSRFSAKDYSDHMALVRA YEGWKDAEKEGSAYEYCWRNFLSAQTMQAIHSLRKQFSFILKDAGLADGDTSANNKLSHSQELVRAIICAGLYPGIASVVHRETSMSFKTMDDGQVLLYA NSVNARYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSMLILFGGALHRGVQGGHLKMLDGYVDLFMDPNLADCYLKLKEELDKVIQQKLEDPNSDIYKEG KYLMLAVQEMISGDQCEGRFVFGRESKRPRESNDDSRFTKDGSNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPKRNKQIAERDAA VEALAWLTHTSTDYNQNEDDANNDSQPDVTDNMLKLLGKRRRSKRTTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04895			DEA(D/H)-box RNA helicase fami...		Lus10034126 [exp]	0	1
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10016788 [exp]	4.1	0.8674
AT3G04160			unknown protein		Lus10021982 [exp]	4.5	0.8596
AT3G54610		ATGCN5, HAG1, H...	HISTONE ACETYLTRANSFERASE 1, g...		Lus10002718 [exp]	6.7	0.8131
AT1G52640			Pentatricopeptide repeat (PPR)...		Lus10030887 [exp]	7.9	0.8188
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013074 [exp]	14.3	0.8167
AT4G16570		ATPRMT7	ARABIDOPSIS THALIANA PROTEIN A...		Lus10004715 [exp]	14.7	0.8341
AT4G17140			pleckstrin homology (PH) domai...		Lus10039773 [exp]	14.9	0.7199
AT5G13950			unknown protein		Lus10035121 [exp]	20.2	0.7750
AT3G19740			P-loop containing nucleoside t...		Lus10040976 [exp]	22.7	0.8320
AT1G28690			Tetratricopeptide repeat (TPR)...		Lus10015308 [exp]	23.1	0.8139

Compare expression of checked genes

Lus10034126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.