Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27610 291 / 1e-95 unknown protein AT4G27620 284 / 5e-93 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043458 [exp] 603 / 0 AT4G27610 343 / 6e-118 unknown protein Lus10028872 [exp] 443 / 3e-155 AT4G27620 337 / 3e-115 unknown protein Lus10008948 [exp] 438 / 4e-153 AT4G27620 333 / 6e-114 unknown protein Lus10024541 [exp] 52 / 1e-07 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G042700 [exp] 425 / 4e-148 AT4G27610 403 / 2e-141 unknown protein Potri.013G076900 [exp] 417 / 8e-145 AT4G27610 339 / 5e-116 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034127 pacid=23154774 polypeptide=Lus10034127 locus=Lus10034127.g ID=Lus10034127.BGIv1.0 annot-version=v1.0 ATGAGACCGAGACCGAATGGGATTGCTAGGGGTCAGAGGGAGGAAAGGTTTCAAAGTGGGGGACCAAATTGGATTCTTATAGCAGGCGGTGCCTTGTTAA GTACATTGTCTATCCGCCTTGGCTGCAAGCTGAAGCAGACCTTCGATTCTAGGAAGGAAGCAAATGCTAGGAAGGAGAAATCCCTTGACAGAAGGAGCTC CCCTGGCCGTCATATGCGTTCTAATATGTACTCCCTTTCACATGACGATGATATTTGCTTCAACCAGGTTTCCGGGAACGAAAGCATCACTGAAGTGAAA TACCCCCCTAATGATCACATGTCTGAAAATGATGGTGCTCTGCCTTTAGTCACGGTCAACGCCCCAGAATACTCAAGAGAGAATGGTGCTATGTGGGCTT CATCACTTGATCGTCTCGAGTTGCCTCCAAAACCATTTCACCATTCAAACTGCTCTGACTCGCCTTGCGTCTCTGAGTCTGGTTCAGAGATCCTTACTAA GCGAGATGTGATTCAGAAGCTGAGACAACAACTGAAAAGAAGGGATGACATGATAATCGAGATGCAGGATCAGATCATGGAGTTGCAGAATTCAATCAAT TGTCAGCTGGCGATTTCAACTACTTTACAGTCTCAGGTTGATGCTGCTAACAAGGATTTGCTAAATTCTGAGAGAGAAATCCAGAGGCTGAGGAAGGCCA TTGCAGATAACTGTTTGAAACATGCAAACGGAGATGGAAAACCTTCCGTTATCACTGCATGGCCACTTGAGGTAAGAAATGGACATACAAATGGGTATTG TGATGGTGACAGCACGTTTGAGTTGGCAGAGAAGGGGAGGATTGATGTGGATAAGGTGGAGATGCTTAGGAGGGAAGTAAGAGAGTTAAAGGAAGTTTTG GAAGGGAAGGAATACTTGCTGCAGAGCTACAAGGAGCAGAAATCAGAACTCTCCATGAAGATCAAGGATGATGAGCTACTGGTCCCTCATGAAGATTCCA GAGTTCCGGTCATTCGAGTCCACTCTGTGGCACTCAAAGGGAAGGTCATCGAATCGGTGGAATCGTGGAGCCAAATCAAACATTTTGAAGAGGAACTCTC AAAGAAGGATGCTAGGATACCCCTGACATGGATCAATGAGGATAAATACATACTTAAAGTCTGCCCAACCAAACAAGTGGCACTGCTCACCAGTGGCATC GATGCCGCACCAACAACGGCGGATTCACGCCATGGGCCAATCGGCACCACTTGTCTCGACCAAGATGAATACCAGAAGACTTATACAACATTTGAAGACA TTTGTTCGAGCCAAATATGCCCAGAAATCGAAGGAAGTCCACCCTTCTGA
AA sequence Show only first row Show all	>Lus10034127 pacid=23154774 polypeptide=Lus10034127 locus=Lus10034127.g ID=Lus10034127.BGIv1.0 annot-version=v1.0 MRPRPNGIARGQREERFQSGGPNWILIAGGALLSTLSIRLGCKLKQTFDSRKEANARKEKSLDRRSSPGRHMRSNMYSLSHDDDICFNQVSGNESITEVK YPPNDHMSENDGALPLVTVNAPEYSRENGAMWASSLDRLELPPKPFHHSNCSDSPCVSESGSEILTKRDVIQKLRQQLKRRDDMIIEMQDQIMELQNSIN CQLAISTTLQSQVDAANKDLLNSEREIQRLRKAIADNCLKHANGDGKPSVITAWPLEVRNGHTNGYCDGDSTFELAEKGRIDVDKVEMLRREVRELKEVL EGKEYLLQSYKEQKSELSMKIKDDELLVPHEDSRVPVIRVHSVALKGKVIESVESWSQIKHFEEELSKKDARIPLTWINEDKYILKVCPTKQVALLTSGI DAAPTTADSRHGPIGTTCLDQDEYQKTYTTFEDICSSQICPEIEGSPPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27610			unknown protein		Lus10034127 [exp]	0	1
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10021652 [exp]	15.7	0.6111
AT1G33810			unknown protein		Lus10005296 [exp]	15.7	0.5716
AT3G04950			unknown protein		Lus10000934 [exp]	20.8	0.6240
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10000492 [exp]	24.8	0.5619
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10019777 [exp]	26.3	0.6012
AT4G36680			Tetratricopeptide repeat (TPR)...		Lus10041726 [exp]	28.9	0.5634
					Lus10020868 [exp]	34.7	0.6016
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Lus10019503 [exp]	35.6	0.5787
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Lus10038018 [exp]	37.4	0.5851
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10033954 [exp]	43.1	0.5823

Compare expression of checked genes

Lus10034127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.