Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06600 160 / 6e-45 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT3G11910 157 / 8e-44 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT3G58250 115 / 1e-30 TRAF-like family protein (.1) AT3G58360 99 / 1e-24 TRAF-like family protein (.1) AT3G58270 97 / 1e-23 Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (.1), Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (.2) AT3G58340 92 / 6e-22 TRAF-like family protein (.1) AT3G58210 92 / 6e-22 TRAF-like family protein (.1) AT3G58350 88 / 1e-20 RTM3 RESTRICTED TEV MOVEMENT 3 (.1) AT3G58410 88 / 2e-20 TRAF-like family protein (.1) AT2G05420 87 / 3e-20 TRAF-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043456 [exp] 211 / 8e-63 AT5G06600 1925 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10034130 [exp] 209 / 7e-62 AT3G11910 1888 / 0.0 ubiquitin-specific protease 13 (.1.2) Lus10028871 [exp] 188 / 7e-55 AT5G06600 1351 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10008949 [exp] 188 / 8e-55 AT5G06600 1904 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10029309 [exp] 165 / 9e-47 AT5G06600 1957 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10019772 [exp] 116 / 1e-29 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10025569 [exp] 107 / 3e-27 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3) Lus10027030 [exp] 102 / 1e-25 AT5G06600 120 / 8e-30 ubiquitin-specific protease 12 (.1.2.3) Lus10022207 [exp] 91 / 7e-21 AT1G04300 722 / 0.0 TRAF-like superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G012600 [exp] 191 / 1e-55 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.010G245100 [exp] 187 / 1e-54 AT5G06600 1907 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.006G198300 [exp] 171 / 1e-48 AT5G06600 1954 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.016G064100 [exp] 168 / 6e-48 AT5G06600 1943 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.008G163300 [exp] 84 / 2e-18 AT1G04300 846 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Potri.010G075000 [exp] 82 / 5e-18 AT1G04300 855 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Potri.001G130700 [exp] 80 / 1e-17 AT3G17380 244 / 2e-79 TRAF-like family protein (.1) Potri.003G103200 [exp] 80 / 2e-17 AT3G17380 251 / 2e-82 TRAF-like family protein (.1) Potri.008G005300 [exp] 72 / 1e-14 AT3G17380 317 / 7e-108 TRAF-like family protein (.1) Potri.008G099600 [exp] 68 / 3e-13 AT3G17380 344 / 1e-118 TRAF-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [flax] [poplar] TRAF PF00917 [flax] [poplar] MATH MATH domain
Representative CDS sequence Show only first row Show all	>Lus10034129 pacid=23154773 polypeptide=Lus10034129 locus=Lus10034129.g ID=Lus10034129.BGIv1.0 annot-version=v1.0 ATGGGGAACTGCAAGCACCATCAGGAAGCATCGCTCATAATAGCCCCGTGTAAGTTCCCATCGGAATACCCGAATTGTCCCTTCGGTGGCTACACATACA CTGATCCATCATCGTCTCCGCTACAGAGCGCGCTCTTTCTTTTGCTTTCTCGCTCGGTGGTGTCAACTTCTTCTGCTTTACGTCGATCAGCGGCTGCCTT CCCATCGCCCAACTATGACTCTGATGACACCTCCGCCAATGGATTCATACCTGCCGAAACAGCTACAACTGAGGCTCAGTCAGTTGATGATCCACCATCG GCGAGGTTTACCTGGACCATTGACAATTTCTCCAGACTCAACACGAAAAAGTTGTATTCTGATGTCTTTGTTGTTGGAGGTTATAAATGGCGGATTCTTG TTTTTCCCAAGGGTAACAATGTTGACCATCTATCTATGTACCTAGATGTTGCAGACTCTGCAACTTTACCATATGGCTGGAGCAGATATGCTCAGTTCAG CCTGACCATTGTTAATCAATTACAGCAGAAGTGCTCTATCAGGAAAGGTAGTTGCTCCTCCTCCTATTTTACTGGAGACTATACACTGTCTAGAATGCTT CGATTGTTTGTTTTGAGCTGCACTTCTAGTCTCATTTCGTCTGAGAAGTTTACGGTTCCTAGAAATATGCGGAGTTAA
AA sequence Show only first row Show all	>Lus10034129 pacid=23154773 polypeptide=Lus10034129 locus=Lus10034129.g ID=Lus10034129.BGIv1.0 annot-version=v1.0 MGNCKHHQEASLIIAPCKFPSEYPNCPFGGYTYTDPSSSPLQSALFLLLSRSVVSTSSALRRSAAAFPSPNYDSDDTSANGFIPAETATTEAQSVDDPPS ARFTWTIDNFSRLNTKKLYSDVFVVGGYKWRILVFPKGNNVDHLSMYLDVADSATLPYGWSRYAQFSLTIVNQLQQKCSIRKGSCSSSYFTGDYTLSRML RLFVLSCTSSLISSEKFTVPRNMRS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10034129 [exp]	0	1
AT1G02080			transcription regulators (.1.2...		Lus10042877 [exp]	8.4	0.9497
AT5G24740			Protein of unknown function (D...		Lus10003835 [exp]	11.0	0.9476
ATMG00650		ATMG00650.1, NA...	NADH dehydrogenase subunit 4L ...		Lus10004838 [exp]	15.3	0.9307
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040892 [exp]	15.7	0.9397
AT3G02260		CRM1, TIR3, LPR...	UMBRELLA 1, TRANSPORT INHIBITO...		Lus10000087 [exp]	16.0	0.9396
ATMG00510		ATMG00510.1, NA...	NADH dehydrogenase subunit 7 (...		Lus10000460 [exp]	19.3	0.9296
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10001859 [exp]	21.2	0.9312
ATMG00080		ATMG00080.1, RP...	ribosomal protein L16 (.1)		Lus10004083 [exp]	24.0	0.9284
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10035589 [exp]	24.2	0.9280
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10016882 [exp]	24.5	0.9287

Compare expression of checked genes

Lus10034129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.