Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11910 1811 / 0 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT5G06600 1807 / 0 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT3G58250 149 / 2e-39 TRAF-like family protein (.1) AT3G58270 136 / 1e-34 Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (.1), Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (.2) AT3G58360 124 / 5e-31 TRAF-like family protein (.1) AT3G58210 124 / 1e-30 TRAF-like family protein (.1) AT3G58340 123 / 2e-30 TRAF-like family protein (.1) AT3G58260 114 / 2e-27 TRAF-like family protein (.1) AT3G58350 112 / 5e-27 RTM3 RESTRICTED TEV MOVEMENT 3 (.1) AT2G05420 112 / 5e-27 TRAF-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043456 [exp] 2118 / 0 AT5G06600 1925 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10008949 [exp] 2004 / 0 AT5G06600 1904 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10029309 [exp] 1787 / 0 AT5G06600 1957 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10028871 [exp] 957 / 0 AT5G06600 1351 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10034129 [exp] 211 / 6e-62 AT5G06600 164 / 2e-46 ubiquitin-specific protease 12 (.1.2.3) Lus10025569 [exp] 155 / 3e-40 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3) Lus10019772 [exp] 151 / 1e-36 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10027030 [exp] 125 / 5e-31 AT5G06600 120 / 8e-30 ubiquitin-specific protease 12 (.1.2.3) Lus10043455 [exp] 117 / 2e-26 AT3G54510 883 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G012600 [exp] 1973 / 0 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.010G245100 [exp] 1969 / 0 AT5G06600 1907 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.006G198300 [exp] 1885 / 0 AT5G06600 1954 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.016G064100 [exp] 1853 / 0 AT5G06600 1943 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.005G179500 [exp] 114 / 3e-25 AT3G49600 1245 / 0.0 ubiquitin-specific protease 26 (.1) Potri.001G130700 [exp] 107 / 7e-25 AT3G17380 244 / 2e-79 TRAF-like family protein (.1) Potri.002G081600 [exp] 110 / 3e-24 AT3G49600 1251 / 0.0 ubiquitin-specific protease 26 (.1) Potri.008G099600 [exp] 105 / 3e-24 AT3G17380 344 / 1e-118 TRAF-like family protein (.1) Potri.008G163300 [exp] 107 / 2e-23 AT1G04300 846 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Potri.003G103200 [exp] 102 / 4e-23 AT3G17380 251 / 2e-82 TRAF-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase CL0389 [flax] [poplar] TRAF PF00917 [flax] [poplar] MATH MATH domain CL0072 [flax] [poplar] Ubiquitin PF12436 [flax] [poplar] USP7_ICP0_bdg ICP0-binding domain of Ubiquitin-specific protease 7
Representative CDS sequence Show only first row Show all	>Lus10034130 pacid=23154732 polypeptide=Lus10034130 locus=Lus10034130.g ID=Lus10034130.BGIv1.0 annot-version=v1.0 ATGCTAGTTCCACAAACTGACTTGGTGGAAGGTCCACAGCCCATGGAAGTCGCACCAGCCGAAACAGCTATAACTGAGGCTCAGTCAGTTGATGATCCAC CATCGGCAAGGTTTACCTGGACCATTGACAACTTCTCCAGACTCAACACGAAAAAGTTGTATTCTGATGTCTTTGTTGTTGGAGGTTATAAATGGCGGAT TCTTGTTTTTCCCAAGGGTAACAATGTTGACCATCTATCTATGTACCTAGATGTTGCAGACTCTGCAACTTTACCATATGGCTGGAGCAGATATGCTCAG TTCAGCCTGACCATTGTTAATCAATTACAGCAGAAGTGCTCTATCAGGAAAGAGACGCAACACCAGTTTAATGCTCGTGAGAGTGATTGGGGATTTACTT CATTCATGCCGCTGGGGGAATTATATGATCCTGGTAGAGGTTATCTCGTTAATGATATATGCATAGTAGAGGCAGATGTTGCTGTCCGGAAAATTACAGA TTATTGGTCCCATGATTCTAAAAAAGAGACTGGTTATGTTGGGCTTAAAAATCAAGGAGCAACATGCTACATGAACTCTCTTCTTCAGACGCTCTACCAT ATTCCTTACTTCAGAAAGGCTGTGTATCACATGCCAACAACTGAGAATGACATGCCATCCGGAAGCATTCCTCTTGCTCTGCAGAGTTTGTTCTATAAAC TTCAATACAGTGATACCAGTGTGGCAACAAAAGAGCTGACTAAGTCTTTTGGCTGGGACACTTATGATTCTTTCATGCAGCATGATGTTCAAGAACTTAA TAGGGTTCTTAGTGAAAAGCTTGAAGACAAAATGAAGGGTACTGTTGTGGAGGGAACGATACAACAGTTGTTTGAAGGCCATGCCATGAATTATATAGAA TGCATCAATGTGGACTACAAGTCAACCAGAAAGGAATCATTTTATGATCTACAGCTTGATGTTAAAGGTTGTCGAGATGTCTATGCATCTTTTGACAAGT ATGTTGAAGTGGAACGTCTTGAAGGGGATAACAAGTATCACGCTGAACAACATGGGCTTCAGGATGCCAAAAAGGGAGTCCTTTTTATTGACTCCCCCCC TGTTCTTCAACTTCAGTTGAAAAGATTTGAGTATGACTTTATGCGAGATACAATGGTTAAGATAAATGATCGTTACGAGTTCCCTCTGCAACTTGATCTT GATATAGAGAACGGAAAATATTTGTCGCCAGCTGCAGATAGAAGCGTCCGCAACCTTTATACTCTCCACAGTGTGTTAGTGCATAGTGGTGGTGTGCATG GTGGACACTATTATGCTTATATCAGACCAACTCTTTCAGATCAATGGTTTAAGTTCGACGATGAGCGGGTAACTAAAGAGGACATGAAAAGAGCATTAGA GGAGCAGTATGGCGGCGAGGAAGAGTTGCCGCAAACAAATCCTGGATTCAACAATTCTCCTTTTAAGTTCACAAAATATTCAAATGCTTATATGCTTGTG TATATACGCGAGTCCGACAAGGAAAAGATCATCTGTAATGTGGATGAGAAGGACATTGCAGAACATTTGAGGGTAAGGTTGAAGAAAGAACAGGAGGAAA AGGAACAAAAGAGAAAGGAAAAATCCGAGGCCCACTTGTACACTATTATAAAGGTTGCGCGTAGCGAGGATCTTCTTGAACAGATTGGGAAGGATATTTA TTTTGATCTTGTGGATCATGACAAAGTTCGCAGTTTTCGCATTCAGAAGCAGACTCCCTTTACCCTTTTCAAGGAAGAAGTTGCGAAAGAGTTTGGTGTC CCGATTCAGTTCCAACGTTTCTGGCTATGGGCAAAACGACAGAACCATACATACCGGCCAAACCGGCCATTAACTCCTCAAGAAGAATCACAATCAGTTG GACAATTGAGAGAAGTATCAAACAAAGCAAATAATGCGGAGCTAAAGTTGTTGTTAGAAGTGGAACTTGGACCGGATATGTGTCCTACTGCTCCTCCTGA AAGAACGAAGGAGGATATTCTGCTCTTCTTTAAACTATATGACCCATTGAAAGAAGAACTGAGGTATCTTGGGAGGCTATTTGTAAAGGGTAGTGGTAAG CCAGCGGAGATTTTGACCAAGTTAAATGAAATGGCTGGCTATGCTCCTGACCAAGAGATTGAGCTTTATGAGGAAATAAAGTTTGAACCTCATGTCATGT GTGAACCCATTGACAAGAAGATAGCATTTCGCTCTAGCCAGCTGGAAGATGGAGACATAGTTTGCTTTCAGAAGCCCCCTCCTGTGAGTGGGGAACAATG GCGCTATCCTGATGTGCCTTCTTTTCTTGAATATGTGCATAATCGACAGGTGGTTCGTTTTCGATCATTAGAGAAACCGAAAGAAGATGAATTCTCCTTA GAATTGTCAAAGCTTCATACGTACGATGATGTGGTTGAAAGGGTAGCTCATCATCTGTGCTTGGAAGATCCATCCAAAATTAGGCTAACATCTCACAATT GTTACTCCCAGCAACCTAAACCTCAACCAATTAAGTATAGAGGAGTTGAACATTTGTCTGATATGCTGGTCCATTACAACCAGACATCTGACATTCTATA CTATGAAGTGCTTGATATTCCTCTACCAGAGCTGCAAGGTCTGAAAACTTTGAAAGTTGCCTTTCATCATGCCACCAAGGATGAGGTTGTAATTTATACC ATTAGATTGCCAAAGCAGAGCACCGTAGGTGATGTCATAAATGATCTCAAGACTAAGGTCGAGTTGTCTCACCCCAATGCTGAACTTAGACTACTGGAGG TGTTCTATCACAAGATATACAAGATCTTTCCACCGAATGAGAAGATTGAAAACATTAATGACCAGTACTGGACACTCCGTGCAGAGGAGATCCCAGAAGA GGAGAAACAGATTGGTCCAAATGATCGTTTAATACATGTTTATCATTTCATGAAGGACACAGCTCAAAACCAGCAAGTTCAAAATTTCGGGGAACCATTT TTCCTGGTAATTCGCGAGGGGGAGACATTGGCTGAAGTGAAAGTTCGTATACAGCAGAAATTGCAGGTTCCTGATGAGGAGTTTTCAAAGTGGAAATTTG CGTTTCTGTCACTGGGTCGGCCAGAGTATCTTGAAGAAGGTGATGTGGTTTCAAGTCGATTTCAGAGAAGGGACGTGTATGGAGCTTGGGAGCAGTATCT AGGGCTGGAGCATGCTGATAGTGCTCCAAAACGGTCATATGCAGCTAATCAGATTCAAGATGTGTACGAGACTACCTATGAAACATTTGGGGCAGTTCTG GCCGTACATTCATCACTATATAATCGTCGAAATTGCTCTGATGCACGTCACTATGATTGGTCTGTTTGGCCTGAAATCCAAACCTGCAGCTTCAATAGCT ACCATCCCACTCTTGGTGCTTACTTTGGTGTTCAACGAATACTGCAAGATGCGTTTTCTTCCCACTTTTCCTATCGATGTCAGGATGCTGCAGAACTTGA CGAATTAGACCAGAAGAACGGAGAGTTAGAAACCAACTATCAAAATGCTAGCTCCGCCTATGAGACCAGCCAAGAATTTTGCCCAAGTATTCAGTTTAAA CGATAA
AA sequence Show only first row Show all	>Lus10034130 pacid=23154732 polypeptide=Lus10034130 locus=Lus10034130.g ID=Lus10034130.BGIv1.0 annot-version=v1.0 MLVPQTDLVEGPQPMEVAPAETAITEAQSVDDPPSARFTWTIDNFSRLNTKKLYSDVFVVGGYKWRILVFPKGNNVDHLSMYLDVADSATLPYGWSRYAQ FSLTIVNQLQQKCSIRKETQHQFNARESDWGFTSFMPLGELYDPGRGYLVNDICIVEADVAVRKITDYWSHDSKKETGYVGLKNQGATCYMNSLLQTLYH IPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHAMNYIE CINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEQHGLQDAKKGVLFIDSPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDL DIENGKYLSPAADRSVRNLYTLHSVLVHSGGVHGGHYYAYIRPTLSDQWFKFDDERVTKEDMKRALEEQYGGEEELPQTNPGFNNSPFKFTKYSNAYMLV YIRESDKEKIICNVDEKDIAEHLRVRLKKEQEEKEQKRKEKSEAHLYTIIKVARSEDLLEQIGKDIYFDLVDHDKVRSFRIQKQTPFTLFKEEVAKEFGV PIQFQRFWLWAKRQNHTYRPNRPLTPQEESQSVGQLREVSNKANNAELKLLLEVELGPDMCPTAPPERTKEDILLFFKLYDPLKEELRYLGRLFVKGSGK PAEILTKLNEMAGYAPDQEIELYEEIKFEPHVMCEPIDKKIAFRSSQLEDGDIVCFQKPPPVSGEQWRYPDVPSFLEYVHNRQVVRFRSLEKPKEDEFSL ELSKLHTYDDVVERVAHHLCLEDPSKIRLTSHNCYSQQPKPQPIKYRGVEHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHATKDEVVIYT IRLPKQSTVGDVINDLKTKVELSHPNAELRLLEVFYHKIYKIFPPNEKIENINDQYWTLRAEEIPEEEKQIGPNDRLIHVYHFMKDTAQNQQVQNFGEPF FLVIREGETLAEVKVRIQQKLQVPDEEFSKWKFAFLSLGRPEYLEEGDVVSSRFQRRDVYGAWEQYLGLEHADSAPKRSYAANQIQDVYETTYETFGAVL AVHSSLYNRRNCSDARHYDWSVWPEIQTCSFNSYHPTLGAYFGVQRILQDAFSSHFSYRCQDAAELDELDQKNGELETNYQNASSAYETSQEFCPSIQFK R

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11910		AtUBP13, UBP13	ubiquitin-specific protease 13...		Lus10034130 [exp]	0	1
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10019489 [exp]	2.0	0.9099
AT2G25730			unknown protein		Lus10007687 [exp]	3.5	0.9140
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Lus10042900 [exp]	3.7	0.8766
AT1G24300			GYF domain-containing protein ...		Lus10032021 [exp]	6.0	0.8990
AT1G55750			BSD domain (BTF2-like transcri...		Lus10007089 [exp]	6.0	0.8635
AT3G07160		CALS9, ATGSL10	glucan synthase-like 10 (.1)		Lus10042959 [exp]	7.7	0.8960
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Lus10033549 [exp]	8.8	0.8859
AT5G23490			unknown protein		Lus10004286 [exp]	8.9	0.8348
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10017398 [exp]	10.5	0.8938
AT3G01320		SNL1	SIN3-like 1 (.1.2)		Lus10014504 [exp]	11.3	0.8854

Compare expression of checked genes

Lus10034130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.