Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04850 375 / 1e-133 VPS60.2 SNF7 family protein (.1.2) AT3G10640 373 / 4e-133 VPS60.1 SNF7 family protein (.1.2) AT4G29160 65 / 6e-13 SNF7.1 SNF7 family protein (.1.2.3) AT2G19830 57 / 6e-10 VPS32, SNF7.2 SNF7 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043454 [exp] 431 / 3e-155 AT5G04850 383 / 6e-136 SNF7 family protein (.1.2) Lus10008953 [exp] 404 / 5e-145 AT5G04850 404 / 9e-145 SNF7 family protein (.1.2) Lus10028867 [exp] 406 / 6e-142 AT5G04850 399 / 7e-139 SNF7 family protein (.1.2) Lus10032705 [exp] 51 / 8e-08 AT2G19830 321 / 1e-112 SNF7 family protein (.1) Lus10012921 [exp] 49 / 5e-07 AT2G19830 318 / 1e-111 SNF7 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G242700 [exp] 382 / 2e-136 AT3G10640 405 / 1e-145 SNF7 family protein (.1.2) Potri.008G018300 [exp] 374 / 3e-133 AT3G10640 404 / 5e-145 SNF7 family protein (.1.2) Potri.018G069900 [exp] 48 / 1e-06 AT4G29160 222 / 1e-73 SNF7 family protein (.1.2.3) Potri.005G067700 [exp] 42 / 0.0001 AT5G09260 248 / 7e-84 vacuolar protein sorting-associated protein 20.2 (.1) Potri.006G154000 [exp] 40 / 0.0005 AT4G29160 224 / 3e-74 SNF7 family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0235 [flax] [poplar] PspA PF03357 [flax] [poplar] Snf7 Snf7
Representative CDS sequence Show only first row Show all	>Lus10034131 pacid=23154708 polypeptide=Lus10034131 locus=Lus10034131.g ID=Lus10034131.BGIv1.0 annot-version=v1.0 ATGCAGAGAATCTTCGGCTCTAAGAAGAACAAGGATCCTCCCCCTTCCGTCTCCGATGCCTCCGATAGGATTAATAAAAGGGGAGATAATGTGGAGGAGA AGATAAAAAAGCTGGATGCTGAACTCAACAAATACAAAGAACAGATTAAGAAAACACGACCTGGGCCTGCTCAGGAGGCTGTTAAAGCACGTGCCATGAG GGTTCTTAAGCAGAAGCGCATGTATGAGGGTCAGCGTGACATGCTTTACAACCAAACTTTTAACCTTGACCAAGTTGCTTTTGCTGCTGAGGGTATTAAA GATGCTCAGCAAACTATGTCAGCTCTGAAGTCTGCGAACAAAGAGTTGAAAGGGATGATGAAAACTGTTAAGATTCAAGATATAGATAACTTGCAAGACG AGATGATGGACCTGATGGAAGTTAGTAGTGAAATCCAAGAGACCCTGGGTAGAAGTTATAATGTGCCCGATGATATTGATGAGGATGAACTCATGGGTGA ACTTGATGCTTTGGAGGCAGACATGGGACTGGGGACTGAAGGTGAAGGTGTGCCGTCCTATTTGCAACCTGATAAGGAATCAGATCTGGATGCAGAATTG AACTTACCTTCAGCGCCCATGGGCCATGCTGGTAGACCTCAGGATCTGTACCAGAGCGATTAA
AA sequence Show only first row Show all	>Lus10034131 pacid=23154708 polypeptide=Lus10034131 locus=Lus10034131.g ID=Lus10034131.BGIv1.0 annot-version=v1.0 MQRIFGSKKNKDPPPSVSDASDRINKRGDNVEEKIKKLDAELNKYKEQIKKTRPGPAQEAVKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFAAEGIK DAQQTMSALKSANKELKGMMKTVKIQDIDNLQDEMMDLMEVSSEIQETLGRSYNVPDDIDEDELMGELDALEADMGLGTEGEGVPSYLQPDKESDLDAEL NLPSAPMGHAGRPQDLYQSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10034131 [exp]	0	1
AT1G05170			Galactosyltransferase family p...		Lus10020042 [exp]	6.9	0.7717
AT3G59350			Protein kinase superfamily pro...		Lus10026708 [exp]	7.6	0.7720
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10002300 [exp]	7.8	0.7752
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10009891 [exp]	8.5	0.7675
AT4G18905			Transducin/WD40 repeat-like su...		Lus10004536 [exp]	9.9	0.7356
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10014845 [exp]	11.2	0.7185
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028753 [exp]	14.1	0.7381
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10020513 [exp]	14.7	0.7474
AT1G13570			F-box/RNI-like superfamily pro...		Lus10034415 [exp]	20.5	0.7377
AT3G59350			Protein kinase superfamily pro...		Lus10025498 [exp]	21.8	0.7570

Compare expression of checked genes

Lus10034131 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.