Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68940 118 / 5e-27 Armadillo/beta-catenin-like repeat family protein (.1.2.3) AT1G20780 105 / 7e-23 ATPUB44, SAUL1 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) AT1G76390 92 / 5e-19 PUB43 plant U-box 43, ARM repeat superfamily protein (.1.2) AT2G23140 74 / 2e-13 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT4G16490 72 / 6e-13 ARM repeat superfamily protein (.1) AT5G67340 72 / 1e-12 ARM repeat superfamily protein (.1) AT1G71020 71 / 1e-12 ARM repeat superfamily protein (.1.2) AT3G46510 71 / 3e-12 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT3G01400 69 / 5e-12 ARM repeat superfamily protein (.1) AT1G23030 66 / 6e-11 PUB11 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043453 [exp] 1409 / 0 AT1G76390 158 / 1e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10005988 [exp] 271 / 2e-77 AT1G76390 244 / 4e-68 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030224 [exp] 179 / 2e-46 AT1G20780 127 / 1e-29 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Lus10039402 [exp] 149 / 2e-36 AT1G76390 157 / 4e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030734 [exp] 144 / 1e-35 AT1G76390 854 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10013216 [exp] 112 / 4e-25 AT1G76390 1034 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10040659 [exp] 104 / 1e-22 AT1G76390 286 / 1e-82 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10018246 [exp] 90 / 5e-18 AT1G76390 272 / 8e-78 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10013050 [exp] 81 / 4e-15 AT1G68940 900 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G024600 [exp] 895 / 0 AT1G20780 107 / 1e-23 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.003G201000 [exp] 885 / 0 AT1G68940 119 / 2e-27 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.002G175800 [exp] 319 / 6e-95 AT1G76390 201 / 2e-53 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.014G102000 [exp] 293 / 3e-85 AT1G76390 207 / 1e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.012G019900 [exp] 255 / 5e-72 AT1G76390 206 / 3e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.010G079200 [exp] 176 / 2e-45 AT1G20780 158 / 1e-39 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.002G007800 [exp] 152 / 6e-38 AT1G76390 1028 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.005G253400 [exp] 147 / 2e-36 AT1G76390 963 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.010G136500 [exp] 101 / 1e-21 AT1G68940 913 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.008G112900 [exp] 97 / 3e-20 AT1G68940 927 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF05804 [flax] [poplar] KAP Kinesin-associated protein (KAP)
Representative CDS sequence Show only first row Show all	>Lus10034132 pacid=23154877 polypeptide=Lus10034132 locus=Lus10034132.g ID=Lus10034132.BGIv1.0 annot-version=v1.0 ATGGTTTCTGAAATTCTGGATGCAGCATCAGAGGGTGATCAGATTGTCTCCGAGTTTCAGCTCCTGGTGGAGAAGTTCGACCCGGTCCTGGTTGCAATTG GTCAGTCAGCGGTTGATAAGGAGCCGGTTCGAGAGGCGATTGAGTCACTCCAGAGAGAGCTTGGAAATGCTAAGACCTTGATCACAAGTGGTGGGTCAAG ATCGGCCATACCCACAAAGCAAGTTGAGGAAATGACTCAAGTTCTAGGCAGGTCTTTAGGCCTTGTCTTGTTTGCGGGATTTGATCTTCCTGTGGAGATG AAAGAGGGTATTGCACAACTTCATAGAGAGGTAATGCACCGCAAGTTTGCTACAACAAGTTTAAGTTCTAGCCCAAGCCATAGTCATGTCAGTTCCTCTG CTGCTAATCCTAGTCCAATGTCGAGTCAAGAATCCAGTGCTTTCATCTTCGGATCGGAAATTGTAGAGCAAGGTGCAGACTTAAGCACCGAGGATGTTGC CTTGCAACTCAAGTATGGAGATGATGAGCAGTTCCTGCTTGCGCTATTGGGGTTGCAAAACTTGATCAGGGATGAAGTGGTGAATAGAGAGTGGATTGAT GATGAAGGTGTTCTTGTAAGCTTGTTCAGCCGGCTGGGTTCAACCAAGGTTGGAAATCGATTGGCTACTATTCAAACCATGAGAAACCTTGCATTGAGGT ATCCTGAACTCAAGGACAGAATGGGAGATGCTGGGAATTTGGCATTGCTGGTGAAATCATTGATGAGAAATGTGGATGAATGTAGGGAAGCTGTGGGATT GTTGCTTCAACTCTCTAAAGTTTCATCAGTGAGGCGAAGAATCGGAAAAGTTCAAGGATGTATCGTCTTGTTAGTTGCCACACTGAAGATGGATGATTCA TTAGCCTCTGGTGATGCAGCCGAGCTATTGGATTCATTGTCAAGCAATGCGCAAAATGCCCTTTACATGGCTGAGGCAGGCTACTTCAAGGCCTTGGTCC ACCACCTCAAAGAAGGTTCAGATATGAGTAAAATTCTGATGGCAACATCCCTTTCAAGAATGGAGCTGACAGATCAAACCAGGTCTTCGATCGGGGGAGA CGGAGCAATCGAGCCCTTAGTGAAGATGTTCAAAACTGGGAAGTTTGAAGCTAAGTTGTCAGCTTTAAATGCATTATACAATTTGTCACGGCTGGAAGAT AACGTACGACGTTTGATCAGTTCAGGAATTGTAGTACCTTTGCTTCAGCTACTCTTCTCAGTGACTTCGGTCCTCATGTCCCTACGAGAACCGGCTTCAG CGATACTAGCTAGGATCGCTGAATCTGAGTCGATTCTGATCAACCAGGATGTAGCTCAGCAGATGCTTTCTCTGTTGAATCTATCAAGTCCAGTGATCCA GTGTCACCTCCTGAAAGCCCTTACAAACATAGCTTCCCACTCCAGCGCGTCTGATGTTCGAGAAAAGATGAAAGAAAATGGTGCCATCCACCTTGTGTTG CCATTCCTGACTGAAACAAACGTCCATATGAGAGCTGCTGCTTTGAACTTTCTCTATACCCTCTCTAAAGATTCTGCAGAAGATTTGATGGAACATCTGG GAGAATACCACCTGGGAAACATTATCAATCTCATCTCATCATCAGGATCGGAAATCGAAAAGGCTGCTGCTATTGGAATACTGAGCAACATCCCCGTTGG TGACAAGAAAGCTACAGATATCCTTAGAAAGTCTAATTTGCTGCCAATTCTCATCTCATTGATGATGACAAGTGCCTCTAGTAGTAGATCGGAACTATTA GCAGAGAGCATCGCGGGGGTATTCATTCGATTTACGATGCCTTCTGATAAGAAACTGCAGCTTCTTGCAGCTGAACTGGGAGTGATCCCTTTACTTGTGA AGCTGCTGTCAAGTGGTTCTTCAGCGGCAAAGCAACGAGCTGCAACTTCACTAGCGCAGTTATCTCAGAACACTCTATTTCTTAGCAGGTCCAGAATATC CAAGTGGAAATGCATCCCTCCATCAGGAGATGCAGTCTGTAAAGTCCACGATGGTTGTTGCTCGGTCAAGAGGACATTTTGCTTGGTGAAGGCCGGAGCG GTTCCTCCATTGATCCAGATACTGATGGAAGAAGAGGTAGAAGAGGCAGAAGTAGAAGCTGCGGTACTGAGTTGTCTTGCAACTCTCTTACAGGATGAGA CATGGGAGAAGGGAAGTAGCTACGTTGCAGAAATGTCTTCAGGAGTTCAGGGGATAGTTAGAGCATTGGACTGCAAAGATGTAAAGGCTCAGGAGAAAGC GTTGTGGATGTTGGAAAGGATATTCAGGAACGAGGCGTTGAGGGCGGAATATGGTGGGACTGCTCAGGTGGTGCTTATTGATCTCGCACAGAATGGCGAT CCGAGGTTGAAATCAGCCATTGGTAAAGTGCTGGCACAGCTTGAGCTCCTGCAATTCCAGTCTAGCTATTTCTAG
AA sequence Show only first row Show all	>Lus10034132 pacid=23154877 polypeptide=Lus10034132 locus=Lus10034132.g ID=Lus10034132.BGIv1.0 annot-version=v1.0 MVSEILDAASEGDQIVSEFQLLVEKFDPVLVAIGQSAVDKEPVREAIESLQRELGNAKTLITSGGSRSAIPTKQVEEMTQVLGRSLGLVLFAGFDLPVEM KEGIAQLHREVMHRKFATTSLSSSPSHSHVSSSAANPSPMSSQESSAFIFGSEIVEQGADLSTEDVALQLKYGDDEQFLLALLGLQNLIRDEVVNREWID DEGVLVSLFSRLGSTKVGNRLATIQTMRNLALRYPELKDRMGDAGNLALLVKSLMRNVDECREAVGLLLQLSKVSSVRRRIGKVQGCIVLLVATLKMDDS LASGDAAELLDSLSSNAQNALYMAEAGYFKALVHHLKEGSDMSKILMATSLSRMELTDQTRSSIGGDGAIEPLVKMFKTGKFEAKLSALNALYNLSRLED NVRRLISSGIVVPLLQLLFSVTSVLMSLREPASAILARIAESESILINQDVAQQMLSLLNLSSPVIQCHLLKALTNIASHSSASDVREKMKENGAIHLVL PFLTETNVHMRAAALNFLYTLSKDSAEDLMEHLGEYHLGNIINLISSSGSEIEKAAAIGILSNIPVGDKKATDILRKSNLLPILISLMMTSASSSRSELL AESIAGVFIRFTMPSDKKLQLLAAELGVIPLLVKLLSSGSSAAKQRAATSLAQLSQNTLFLSRSRISKWKCIPPSGDAVCKVHDGCCSVKRTFCLVKAGA VPPLIQILMEEEVEEAEVEAAVLSCLATLLQDETWEKGSSYVAEMSSGVQGIVRALDCKDVKAQEKALWMLERIFRNEALRAEYGGTAQVVLIDLAQNGD PRLKSAIGKVLAQLELLQFQSSYF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10034132 [exp]	0	1
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10043453 [exp]	1.0	0.9338
AT5G57710			Double Clp-N motif-containing ...		Lus10019984 [exp]	6.2	0.8426
AT1G10660			unknown protein		Lus10029133 [exp]	7.9	0.8760
AT2G39420			alpha/beta-Hydrolases superfam...		Lus10003305 [exp]	9.8	0.8778
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10024003 [exp]	10.6	0.8551
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Lus10020365 [exp]	13.0	0.8600
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10040790 [exp]	15.3	0.8271
AT1G67280			Glyoxalase/Bleomycin resistanc...		Lus10043235 [exp]	19.2	0.8339
AT1G68830		STN7	STT7 homolog STN7 (.1)		Lus10041490 [exp]	24.0	0.8336
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Lus10009541 [exp]	25.2	0.8681

Compare expression of checked genes

Lus10034132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.