Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48410 395 / 1e-137 alpha/beta-Hydrolases superfamily protein (.1) AT2G36290 387 / 2e-134 alpha/beta-Hydrolases superfamily protein (.1) AT1G74300 362 / 1e-124 alpha/beta-Hydrolases superfamily protein (.1) AT1G74280 352 / 9e-121 alpha/beta-Hydrolases superfamily protein (.1) AT3G54240 350 / 4e-120 alpha/beta-Hydrolases superfamily protein (.1) AT1G74290 336 / 3e-114 alpha/beta-Hydrolases superfamily protein (.1) AT5G22460 328 / 1e-111 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G44510 273 / 3e-90 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G08310 265 / 3e-87 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G03240 262 / 7e-86 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043449 [exp] 681 / 0 AT3G48410 395 / 2e-137 alpha/beta-Hydrolases superfamily protein (.1) Lus10028860 [exp] 452 / 2e-160 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10034148 [exp] 422 / 3e-148 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10043437 [exp] 412 / 2e-144 AT2G36290 429 / 5e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10041666 [exp] 413 / 2e-143 AT2G36290 440 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10008968 [exp] 407 / 2e-142 AT2G36290 442 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1) Lus10018549 [exp] 407 / 3e-142 AT2G36290 434 / 8e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10039775 [exp] 400 / 7e-140 AT2G36290 425 / 3e-149 alpha/beta-Hydrolases superfamily protein (.1) Lus10008960 [exp] 378 / 9e-132 AT2G36290 353 / 8e-122 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G237700 [exp] 451 / 4e-160 AT2G36290 452 / 6e-160 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021400 [exp] 442 / 2e-156 AT2G36290 446 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237800 [exp] 422 / 1e-148 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021200 [exp] 416 / 5e-146 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021000 [exp] 415 / 5e-145 AT2G36290 441 / 5e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G164900 [exp] 355 / 2e-122 AT5G22460 374 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G203700 [exp] 353 / 2e-121 AT5G22460 434 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G164600 [exp] 319 / 3e-108 AT3G44510 440 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G131300 [exp] 133 / 8e-35 AT5G02970 658 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G086200 [exp] 131 / 3e-34 AT5G02970 653 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10034135 pacid=23154751 polypeptide=Lus10034135 locus=Lus10034135.g ID=Lus10034135.BGIv1.0 annot-version=v1.0 ATGGCAAGAGGTATTGCATTTGCAGGTGTGGTTTTGATAGGGTTACTGTCATGGGCGTACAACTCCACCTATCCACCACCTCCCAAGATTTGCAGTACCC CACTTACGCATCCAAGGATTAAGCTCAGAGATGGAAGGCACTTGGCTTTTAAACCTCAAGGAGTCCCCAAACATATTTCCAAATTCAATCTCATTTCCAT CCATGGCACCTCCTCTTCCCTTCATCAAACCTTTGGTTCCCCCCAAATCTGGGAGGAGCTAGGAGTTCACATTGTGTCCTTCGACAGACCCGGTTACGGC GAGAGCGATCCGGACCCAAAGCGGACCCCCAAGAGTTTGGCTTTGGATGTTGAAGAGCTTGCTGATCAATTGGAACTTGGCCCCAAATTCTATGTCGTTG GCTTCTCCATGGGTGGTCAAGCTGTATGGGGTTGCCTCAAGTACATCCCTCACAGGCTAGCAGGTGCAGCACTGATTGCACCTGTTGTGAACTACTGGTG GCCTGGGTTCCCAGCAAACTTATCCAAGCAAGCTTACCAACTCCAGCTCTTGCCCGATCAATGGGCATTACGGATTTCTCATTATACTCGTTGCCTCACC TACTGGTGGAACTCTAGGAAGTGGTTTCCTGGATCAGCAGTTTTGGCTGGGAATCCTCAAGTTTTCTCTCCCCAGGACTTGCAAATACTGTCCTCCACGC CAAGGGACCAATTGACCCAAGTCAAGGGATACGCGATTCAGCAAGGTGAATTCGAATCATTGCACCGGGACCTGATGGTTGGATTCGGGAGCTGGGAATT CGGCCCCATGGATTTGGAGAATCCATTTCCAGAAAGCAAAGGCGGGTCGTCGGTCCATGTGTGGCATGGTGATGAGGACAGAATGGCACCAGTGATGTTG CAGCGTTACATTGCGAGCAGACTTCCATGGATAAAGTATCACGAGTTGCCTGGTGCTGGACACTTGTTTGCCTTTGTACCAACTAACGGTGAAGCCATTT TGAAGTCTCTGTTACTTGGCAACAGCTAG
AA sequence Show only first row Show all	>Lus10034135 pacid=23154751 polypeptide=Lus10034135 locus=Lus10034135.g ID=Lus10034135.BGIv1.0 annot-version=v1.0 MARGIAFAGVVLIGLLSWAYNSTYPPPPKICSTPLTHPRIKLRDGRHLAFKPQGVPKHISKFNLISIHGTSSSLHQTFGSPQIWEELGVHIVSFDRPGYG ESDPDPKRTPKSLALDVEELADQLELGPKFYVVGFSMGGQAVWGCLKYIPHRLAGAALIAPVVNYWWPGFPANLSKQAYQLQLLPDQWALRISHYTRCLT YWWNSRKWFPGSAVLAGNPQVFSPQDLQILSSTPRDQLTQVKGYAIQQGEFESLHRDLMVGFGSWEFGPMDLENPFPESKGGSSVHVWHGDEDRMAPVML QRYIASRLPWIKYHELPGAGHLFAFVPTNGEAILKSLLLGNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10034135 [exp]	0	1
					Lus10004960 [exp]	5.1	0.8048
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10004961 [exp]	5.9	0.8134
AT5G19740			Peptidase M28 family protein (...		Lus10011133 [exp]	10.7	0.7903
AT5G47570			unknown protein		Lus10000735 [exp]	16.5	0.8033
AT5G49210			unknown protein		Lus10037138 [exp]	22.8	0.7942
AT5G56790			Protein kinase superfamily pro...		Lus10024111 [exp]	27.9	0.7447
AT1G14300			ARM repeat superfamily protein...		Lus10036742 [exp]	28.3	0.7872
AT3G53220			Thioredoxin superfamily protei...		Lus10026540 [exp]	38.7	0.7377
AT4G09140		ATMLH1	ARABIDOPSIS THALIANA MUTL-HOMO...		Lus10034734 [exp]	54.4	0.7502
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10005458 [exp]	54.9	0.7768

Compare expression of checked genes

Lus10034135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.