Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32605 228 / 2e-75 Mitochondrial glycoprotein family protein (.1) AT1G80720 87 / 3e-21 Mitochondrial glycoprotein family protein (.1) AT1G15870 71 / 2e-14 Mitochondrial glycoprotein family protein (.1) AT3G55605 64 / 4e-12 Mitochondrial glycoprotein family protein (.1) AT5G05990 59 / 4e-10 Mitochondrial glycoprotein family protein (.1) AT5G02050 57 / 1e-09 Mitochondrial glycoprotein family protein (.1) AT4G31930 56 / 3e-09 Mitochondrial glycoprotein family protein (.1) AT2G39795 53 / 2e-08 Mitochondrial glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043448 [exp] 359 / 4e-127 AT4G32605 264 / 1e-89 Mitochondrial glycoprotein family protein (.1) Lus10018327 [exp] 61 / 6e-11 AT4G31930 243 / 2e-81 Mitochondrial glycoprotein family protein (.1) Lus10001015 [exp] 59 / 2e-10 AT3G55605 232 / 1e-76 Mitochondrial glycoprotein family protein (.1) Lus10001017 [exp] 59 / 2e-10 AT3G55605 199 / 2e-64 Mitochondrial glycoprotein family protein (.1) Lus10030157 [exp] 59 / 2e-10 AT3G55605 236 / 6e-78 Mitochondrial glycoprotein family protein (.1) Lus10026060 [exp] 57 / 1e-09 AT1G15870 263 / 4e-89 Mitochondrial glycoprotein family protein (.1) Lus10017126 [exp] 54 / 1e-08 AT4G31930 240 / 3e-80 Mitochondrial glycoprotein family protein (.1) Lus10024351 [exp] 54 / 3e-08 AT5G02050 231 / 6e-76 Mitochondrial glycoprotein family protein (.1) Lus10012653 [exp] 51 / 6e-08 AT5G02050 201 / 2e-65 Mitochondrial glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G015600 [exp] 256 / 4e-86 AT4G32605 262 / 2e-88 Mitochondrial glycoprotein family protein (.1) Potri.010G244500 [exp] 254 / 9e-86 AT4G32605 242 / 3e-81 Mitochondrial glycoprotein family protein (.1) Potri.001G047600 [exp] 65 / 3e-12 AT1G15870 256 / 2e-86 Mitochondrial glycoprotein family protein (.1) Potri.018G021600 [exp] 58 / 4e-10 AT4G31930 259 / 1e-87 Mitochondrial glycoprotein family protein (.1) Potri.010G198600 [exp] 54 / 1e-08 AT2G39795 222 / 1e-72 Mitochondrial glycoprotein family protein (.1) Potri.010G198500 [exp] 54 / 1e-08 AT3G55605 210 / 1e-67 Mitochondrial glycoprotein family protein (.1) Potri.006G090700 [exp] 50 / 2e-07 AT5G02050 228 / 9e-75 Mitochondrial glycoprotein family protein (.1) Potri.006G046350 [exp] 47 / 2e-06 AT2G41600 210 / 2e-69 Mitochondrial glycoprotein family protein (.1.2.3.4.5) Potri.016G102200 [exp] 47 / 3e-06 AT5G02050 216 / 4e-70 Mitochondrial glycoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02330 [flax] [poplar] MAM33 Mitochondrial glycoprotein
Representative CDS sequence Show only first row Show all	>Lus10034136 pacid=23154679 polypeptide=Lus10034136 locus=Lus10034136.g ID=Lus10034136.BGIv1.0 annot-version=v1.0 ATGTCAGCCATCTGGAGGAGTCTGCTACGACATTCTAGAGCTGCGCAGCCATGGCGCTCAATCCCTTCCCGCTCCTCCTCCTCCTCCTCCTCTTCCTCAC CGGCCAATATATCCTCCGCCGTCAACTCCATGTTGCTCCGCTCCCTCAAGGAACACTACCTCGACGTCTCTAAAATGAACCCTCCTCCGAAAGTTAGCGC TCCGCCAGGGTTCACAGTGTTGAAAGGGGCTCTGGATGGAAACGATGGCCCTGTCCTCACTAAGACTTACGGCAACGAAGAAATCAAGATTTCTGTGATG AGATTGTCCAACATAATACCTGGTGGGGGAGGCGGAGGAGATGATGAGGATGATATTAATCAATTGTTCCTCCATCTCCAAGTGTCCAAGCCTGACCAGC ATAAGTCTCTGCATTTCCTATGTGGACTGTACCCGGATGCCCTAGGTATCCACTCTGTTTCGCTGAGGCCGAAGCTTGAAGCTTCAGGGTTTTTCGAGGT TCCTTCGTCTTACAATGGCCCTGTTTTTGGGGATTTGGATCAGAGGACGAGAGATGCATTTCACGACTTTGTGGAGGAGCGAGGGGTGAATGAAAATCTG TTTGCTTTTCTTCAAGCGTGGTTGTATGTGAAGGATCACAGGAACCTCCTGCGTTGGTTCAAAACAGTGGGATCGCACATAAACGAGAAACAAGTTACAG ATTCGTAG
AA sequence Show only first row Show all	>Lus10034136 pacid=23154679 polypeptide=Lus10034136 locus=Lus10034136.g ID=Lus10034136.BGIv1.0 annot-version=v1.0 MSAIWRSLLRHSRAAQPWRSIPSRSSSSSSSSSPANISSAVNSMLLRSLKEHYLDVSKMNPPPKVSAPPGFTVLKGALDGNDGPVLTKTYGNEEIKISVM RLSNIIPGGGGGGDDEDDINQLFLHLQVSKPDQHKSLHFLCGLYPDALGIHSVSLRPKLEASGFFEVPSSYNGPVFGDLDQRTRDAFHDFVEERGVNENL FAFLQAWLYVKDHRNLLRWFKTVGSHINEKQVTDS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32605			Mitochondrial glycoprotein fam...		Lus10034136 [exp]	0	1
AT1G05970			RNA-binding (RRM/RBD/RNP motif...		Lus10017690 [exp]	2.4	0.7669
AT5G27990			Pre-rRNA-processing protein TS...		Lus10006795 [exp]	10.4	0.7650
AT1G71850			Ubiquitin carboxyl-terminal hy...		Lus10035074 [exp]	13.6	0.7513
AT1G10580			Transducin/WD40 repeat-like su...		Lus10030869 [exp]	14.7	0.7471
AT1G71730			unknown protein		Lus10042772 [exp]	14.8	0.7193
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10005506 [exp]	15.1	0.7312
AT5G24840			tRNA (guanine-N-7) methyltrans...		Lus10026965 [exp]	16.5	0.7309
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035214 [exp]	19.7	0.7251
AT5G41685			Mitochondrial outer membrane t...		Lus10016473 [exp]	27.1	0.6973
AT5G23680			Sterile alpha motif (SAM) doma...		Lus10036012 [exp]	29.6	0.6894

Compare expression of checked genes

Lus10034136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.