Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10650 306 / 1e-86 AtNUP1 unknown protein AT5G20200 95 / 2e-19 nucleoporin-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043447 [exp] 1424 / 0 AT3G10650 320 / 4e-90 unknown protein Lus10028861 [exp] 661 / 0 AT3G10650 436 / 2e-131 unknown protein Lus10008959 [exp] 628 / 0 AT3G10650 405 / 4e-120 unknown protein Lus10043265 [exp] 51 / 7e-06 AT5G20200 290 / 8e-87 nucleoporin-related (.1) Lus10019408 [exp] 50 / 8e-06 AT5G20200 273 / 2e-80 nucleoporin-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G014800 [exp] 443 / 4e-135 AT3G10650 379 / 1e-110 unknown protein Potri.010G244700 [exp] 404 / 4e-121 AT3G10650 353 / 8e-102 unknown protein Potri.018G129900 [exp] 73 / 1e-12 AT5G20200 317 / 1e-96 nucleoporin-related (.1) Potri.018G006200 [exp] 72 / 2e-12 AT4G31430 148 / 4e-38 unknown protein Potri.006G275200 [exp] 61 / 3e-09 AT4G31430 156 / 3e-41 unknown protein Potri.008G015350 [exp] 56 / 6e-08 AT3G10650 77 / 2e-15 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034137 pacid=23154856 polypeptide=Lus10034137 locus=Lus10034137.g ID=Lus10034137.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCGGCGGCTCGAGACCGGAAAGAGACCCAGCCGTACGATGACGGCGGCGGCTATGGAGAGTTCAGGAAGCGTCCTTACCGGCGGAGGGAGA CCACTCCATATGATCGTCCAATTAGCAACCCTGGTCTCCAAAGCTCCAATGGTGGCGGTAATGGTTGGCTTTCAAAATTTGTGGATCCGGCGCAGAGGCT CATTACCTACGGTGCTCACAAGCTTTTTGCATCTATTTTCCGCAAGCGCCTGCCTCCCACTCAGCAGACGCAGCCTCCGGAGCCAGGGAGTAGAGGGAAT CAGAAGCAAAGGGAAGCATTTGCCGAGGATAAACAAGTCGAAACAGTACCCATGGTCTCCTCGAAGGTCCTTGTAGGCTCACAGGGTGGAACTAATAGAA TTCATGATGGCCCAAGTAGCTCAAATGGTGGTGGGGTTACTGATTTAGAGTCAATGTTGAAACAGAAAAGCTTTACGAGGCATGAGATTGATCGGCTGAC TACCCTACTGCAGTCAAGAGTTGTTGATGTACCCGTTGCAAAAGACGAGAAGTCTGCAGTTGTCCGATCAAATTCATTTCTGATGCCTGGCAATGGAAAG TTCCCCATTACTCCTGTTAAAGAGAATGGGGCTGGGAACCAGTTTGTATCAAACCCAAGTGTCCTAGATCAAGATGTTGCTTCACCTGCAGAGCTTGCAA AAGCTTACATGGGTAGCAGGCCAGCAAAACTATCTCCATCAACGTTAGGTTTGCCCAGTCAACCATGGAAGGGCGATTCAGCTTTGCAGGCCAAACAGAC CTTTCGTTCAAAAGGGTCGAGTACATCGGCCATTTACCAGTCTTCTGGTCTCCCTGGATCGAAAGTTAATGGTTTCATTATTCCAAGATCTCGAGGAAGA TCTGCTGTTTACAGCATGGCTAGATTGCCATATTCCAGGACCCAGTCAAGCAATATGATCCAGGGTGCTGGAACTTTAAAGGACGCTCTCAGTGGCCGAG AGTTTTCATCTCAGAGTGCTTTGGATAAAAACAGATTTTCTGGAACTAGACAAGGGAATTTAAAGAGGAGAAGTTCAGTCCTAGAAAATGATATAGAGTC CATCAGTCCTATACGTAGAATTCGCCAAAAGTCAAATCTGATGTCTGCTGCAGCTGTCTCTGTCTACCGAACTAGTTCTAATTTGGATACGGAGGGGCAG CTGGCCTTGACCTCAAATCCCGCTACAGAGGATGAACAGCCCAAGGAAAATGGTGATTATCGCATGCAGATCTCAGGTTTTGCTCCTGTCTCTACTAAAT CTAGCAAGAATGCTTCAAAGATACTCCAGCAGCTGGATGTGATGGTCTCATCAAGGGAGAAGTCCCCAGCTAAGTTATCACCATCCATGCTTCATGGACA AGCTCTTAGAAGTCTAGATAAAATAGATTCTTCCAAGTTTCTGGAGAGTGCCCAGGATACCAAGACAAATAGAAGGAATGCTGGTATGTCAGATGAGGCT CAATGCTCCATGCCTGAAAAGGAGGACAAGATTGAACAAAATGGTTCAACTCAAGTGGACTCTGGCGGTGACAATGTGACTGCTAAATGTCTGCAGAAAC ATTCAATTGATGCCGCAGCAGCCAATGCCGTAATGAAATATGATGATCAGATTAGTAAGCCAAAAAATCCAGGTTTCCGTATGAGTGCTGATGACTATGA GGATTTCTTGGATATTGATGAAGAAATTACTGCAAGTACTTCAACGAGGTTGGAGGCGGGCGATGTGGAGCTTATTTCTAGCTCTGCTAAGAAGAAAGCT GCTGAACCTGCTACCGTGGACAAGCCTCCAGTTCTTTCTGGAGCGAAAGAGACCAAAATTGTCAATGGGACACTAGTTGTAGGCAATAGAGACACACTTG CATCTTTAACACCCTCATCTTCTGGAGTTATTAAGCATGCTGCCATCCCTAGCCAATCAGCTGCAGCTTTTGATAAGTCTCCTAGTGAGATTTTTAGCTA TGGAGAGAAAGCTTCCTTGCGAACAGGGCAAAATGGACCTACTGAGAAAGCTTCGCTATTTTCTGCCGCATCTCTTTCAGCATCTCCAAATGATGGTTTT GGCATGAAATTTGGTGCTTCTTCTGGCGCCCAATCAGAAAGTTCACAGAGGATTTTTAGTGTTGCTTCTACCGTTGATCCTTCGGCGAAACAAGATAAAA ATGATAAAGGTGCAGGCAGAATTGAACATTGTGATTCTTTCCAGACAAGTAAAATTGTGCCTCCATCTGCACTGGCATCATCGCCAGCTGTAGGCATCTT CTCATTTGGGTCTGGTTTACAAAATGGAACTCTTCCAGGGCCATCAACGAGTCAAACTGCAGCTGATAGCTCCCTATCAGTTGTTCCTAATGCTGGCCTT CCCACATACAGCTCTGTGAATGACATCAACACTGGTTTTAACAGAGATTCTGCAAAAACGACAGTCCCTGACCTGGGTTCATCTATTTTTAAGTTTGGGT CACCTGCCACATCAAATAAAGGTGCAGGCAGAATTGAACATTGTGATTCTTTCCAGACAAGTAAAGTTGTGCCTCCATCTGCACTGGCATCATCGCCAGC TGTAGGCATCTTCTCATTTGGGTCTGGTTTACAAAATGGAACTCTTCCAGGGCCATCAACGAGTCAAACTGCAGCTGATAGCTCCCTATCAGTTGTTCCT AATGCTGGCCTTCCCACATACAGCTCTGTGAATGACATCAACACTGGTTTTAACAGAGATTCTGCAAAAACGACAGTCCCTGACCTGGGTTCATCTATTT TTAAGTCTGGGTCACCTGCCACATCAAATTCAGTTCCTCCGCCATCCACGGATGCTGGTGTTGGCACCAGCCAAACCAAAATAGGGACCAGCTCTGGAAG TTCAACCGGTATTCACTTCGTTGATTCTAAGCCTTCAATTACAAGCAGTCGAAGTGGCCCTTTTGGCATCGCCCCATCCACAGATTCTGGGATCACTACA AGCAGCCCTTTCAGGGATGGTTCCGCTACTGAAAACAAAAGTACTTTTGTTAGTCCATTTGGAGTTACTGGCGCTTCAAGTGCAAGCGCTGGGAGCAGCA TCTTTGGCAGCGCTACTGCTTCTAGTACAGTTAACAACAATAGCCCTCCTGGAAATATGCAGTTTGGTTCTACATTTGCACCTGCTGGAAATCCATTGTT TGGTTCTACAGCTCCTCCGACTGCAGGAAATCCACAACTTGGTTCAACGGCTGGGAACCCGTTTCAATTTGGTGGGCAACCGCAAATTGGTTCACCGTTC CAGGCTAGTGGCAGTGTGGAGTTCAATGCTGGAGGCAGCTTCTCATTAGGCGCAGGTGACAAGAGCAACAGAAGAATTGTCAAAGTGAGGAAAACACGGA AGAAATGA
AA sequence Show only first row Show all	>Lus10034137 pacid=23154856 polypeptide=Lus10034137 locus=Lus10034137.g ID=Lus10034137.BGIv1.0 annot-version=v1.0 MAAAAARDRKETQPYDDGGGYGEFRKRPYRRRETTPYDRPISNPGLQSSNGGGNGWLSKFVDPAQRLITYGAHKLFASIFRKRLPPTQQTQPPEPGSRGN QKQREAFAEDKQVETVPMVSSKVLVGSQGGTNRIHDGPSSSNGGGVTDLESMLKQKSFTRHEIDRLTTLLQSRVVDVPVAKDEKSAVVRSNSFLMPGNGK FPITPVKENGAGNQFVSNPSVLDQDVASPAELAKAYMGSRPAKLSPSTLGLPSQPWKGDSALQAKQTFRSKGSSTSAIYQSSGLPGSKVNGFIIPRSRGR SAVYSMARLPYSRTQSSNMIQGAGTLKDALSGREFSSQSALDKNRFSGTRQGNLKRRSSVLENDIESISPIRRIRQKSNLMSAAAVSVYRTSSNLDTEGQ LALTSNPATEDEQPKENGDYRMQISGFAPVSTKSSKNASKILQQLDVMVSSREKSPAKLSPSMLHGQALRSLDKIDSSKFLESAQDTKTNRRNAGMSDEA QCSMPEKEDKIEQNGSTQVDSGGDNVTAKCLQKHSIDAAAANAVMKYDDQISKPKNPGFRMSADDYEDFLDIDEEITASTSTRLEAGDVELISSSAKKKA AEPATVDKPPVLSGAKETKIVNGTLVVGNRDTLASLTPSSSGVIKHAAIPSQSAAAFDKSPSEIFSYGEKASLRTGQNGPTEKASLFSAASLSASPNDGF GMKFGASSGAQSESSQRIFSVASTVDPSAKQDKNDKGAGRIEHCDSFQTSKIVPPSALASSPAVGIFSFGSGLQNGTLPGPSTSQTAADSSLSVVPNAGL PTYSSVNDINTGFNRDSAKTTVPDLGSSIFKFGSPATSNKGAGRIEHCDSFQTSKVVPPSALASSPAVGIFSFGSGLQNGTLPGPSTSQTAADSSLSVVP NAGLPTYSSVNDINTGFNRDSAKTTVPDLGSSIFKSGSPATSNSVPPPSTDAGVGTSQTKIGTSSGSSTGIHFVDSKPSITSSRSGPFGIAPSTDSGITT SSPFRDGSATENKSTFVSPFGVTGASSASAGSSIFGSATASSTVNNNSPPGNMQFGSTFAPAGNPLFGSTAPPTAGNPQLGSTAGNPFQFGGQPQIGSPF QASGSVEFNAGGSFSLGAGDKSNRRIVKVRKTRKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10650		AtNUP1	unknown protein		Lus10034137 [exp]	0	1
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10004767 [exp]	2.6	0.9646
AT4G38760			Protein of unknown function (D...		Lus10012168 [exp]	4.2	0.9515
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10005726 [exp]	5.1	0.9542
AT1G26170			ARM repeat superfamily protein...		Lus10031911 [exp]	5.5	0.9515
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10001714 [exp]	7.0	0.9221
AT2G07820			unknown protein		Lus10015035 [exp]	7.1	0.9533
AT1G76740			unknown protein		Lus10028114 [exp]	7.7	0.9442
AT5G42950			GYF domain-containing protein ...		Lus10032720 [exp]	8.5	0.9524
AT1G05570		ATGSL6, ATGSL06...	GLUCAN SYNTHASE-LIKE 6, callos...		Lus10013744 [exp]	10.2	0.9440
AT2G17140			Pentatricopeptide repeat (PPR)...		Lus10026545 [exp]	10.4	0.9409

Compare expression of checked genes

Lus10034137 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.