Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56240 107 / 3e-29 ATX1, CCH copper chaperone (.1) AT1G66240 103 / 3e-28 ATX1, ATATX1 homolog of anti-oxidant 1 (.1.2.3) AT5G27690 51 / 2e-07 Heavy metal transport/detoxification superfamily protein (.1) AT1G71050 49 / 2e-07 HIPP20 heavy metal associated isoprenylated plant protein 20, Heavy metal transport/detoxification superfamily protein (.1) AT5G02600 50 / 7e-07 NPCC6, NAKR1 nuclear-enriched phloem companion cell gene 6, SODIUM POTASSIUM ROOT DEFECTIVE 1, Heavy metal transport/detoxification superfamily protein (.1.2) AT1G06330 48 / 8e-07 Heavy metal transport/detoxification superfamily protein (.1) AT2G37390 49 / 1e-06 NAKR2 SODIUM POTASSIUM ROOT DEFECTIVE 2, Chloroplast-targeted copper chaperone protein (.1.2) AT5G17450 47 / 1e-06 HIPP21 heavy metal associated isoprenylated plant protein 21, Heavy metal transport/detoxification superfamily protein (.1.2) AT4G08570 47 / 1e-06 Heavy metal transport/detoxification superfamily protein (.1) AT2G18196 47 / 2e-06 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043444 [exp] 119 / 8e-34 AT1G66240 127 / 4e-39 homolog of anti-oxidant 1 (.1.2.3) Lus10043446 [exp] 106 / 1e-27 AT2G22590 74 / 3e-15 UDP-Glycosyltransferase superfamily protein (.1) Lus10028859 [exp] 102 / 7e-27 AT1G66240 125 / 8e-38 homolog of anti-oxidant 1 (.1.2.3) Lus10043445 [exp] 100 / 1e-23 AT5G65550 225 / 3e-68 UDP-Glycosyltransferase superfamily protein (.1) Lus10008963 [exp] 73 / 2e-15 AT1G66240 81 / 5e-20 homolog of anti-oxidant 1 (.1.2.3) Lus10028865 [exp] 57 / 2e-09 AT5G49690 191 / 1e-55 UDP-Glycosyltransferase superfamily protein (.1) Lus10008956 [exp] 57 / 4e-09 AT5G65550 189 / 1e-54 UDP-Glycosyltransferase superfamily protein (.1) Lus10024435 [exp] 56 / 6e-09 AT2G37390 144 / 2e-41 SODIUM POTASSIUM ROOT DEFECTIVE 2, Chloroplast-targeted copper chaperone protein (.1.2) Lus10025294 [exp] 55 / 1e-08 AT2G37390 141 / 3e-40 SODIUM POTASSIUM ROOT DEFECTIVE 2, Chloroplast-targeted copper chaperone protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G023800 [exp] 104 / 1e-28 AT1G66240 124 / 7e-39 homolog of anti-oxidant 1 (.1.2.3) Potri.010G236500 [exp] 102 / 7e-28 AT1G66240 129 / 1e-40 homolog of anti-oxidant 1 (.1.2.3) Potri.002G092200 [exp] 59 / 1e-10 AT4G08570 193 / 3e-64 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G167000 [exp] 56 / 1e-09 AT4G08570 229 / 1e-78 Heavy metal transport/detoxification superfamily protein (.1) Potri.010G114600 [exp] 55 / 3e-09 AT1G22990 194 / 9e-65 heavy metal associated isoprenylated plant protein 22, Heavy metal transport/detoxification superfamily protein (.1) Potri.006G024800 [exp] 54 / 4e-09 AT3G56891 167 / 5e-54 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G003700 [exp] 54 / 6e-09 AT4G08570 207 / 5e-70 Heavy metal transport/detoxification superfamily protein (.1) Potri.006G213900 [exp] 50 / 5e-07 AT2G37390 127 / 2e-35 SODIUM POTASSIUM ROOT DEFECTIVE 2, Chloroplast-targeted copper chaperone protein (.1.2) Potri.016G080400 [exp] 50 / 5e-07 AT2G37390 133 / 2e-37 SODIUM POTASSIUM ROOT DEFECTIVE 2, Chloroplast-targeted copper chaperone protein (.1.2) Potri.001G452400 [exp] 49 / 5e-07 AT2G18196 256 / 3e-88 Heavy metal transport/detoxification superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034138 pacid=23154726 polypeptide=Lus10034138 locus=Lus10034138.g ID=Lus10034138.BGIv1.0 annot-version=v1.0 ATGCCCCGCCTCAAGTCGGCCTTCGACTCCTTGGCCACTCGGTCGGCCTTCTCGTCGATACTGATATGGGTGTCACCTGACTTGCTCATCTACGACTTCC TCCAGCCATGGGCTCCGCAGCTGGCTTCCTCACTTCTCCACATCCCCGCCGTCTTGTTCCACTGCACCGGCGCCGCCATGATAAAGGGGAGGAACAGCCA AGAACGGCGCCGTCGAATAGAGGATGGCGGCGTCGATGAGCCTGAAGATGGGGTGACGGTGGACGGAAGATCAAACCCAGTTTGGATCACGAATCATTCA CACCCCCCGCGACCGTCTCCTCCCCTTTCGTTAAAATCTCCGTCAGCCATGGCTCAGACTGTTGTCCTCAAGGTTGCAATGTCCTGCGGGGGATGCTCCG GGGCTGTGAATAGGGTCTTGTCCAAAATGGAAGTTCCGCAACCACTCACCTACATAAAGTTGCGGTTTGCTGACTCCTTGGTTCTCTTTCTCATTTGTGT GGAGTCTTTCGACATTGACATGAAGGAGCAGAAAGTTACAGTGAAGGGAAACGTGGAGCCAGATGCTGTCTTCCAGGCCGTGTCAAAGACGGGGAAGAAG ACTGCATTCTGGGAAGCAGAAGCACCTGCAGCAGCAGAAACAAAGCCTGCTGAGTCGGAGACTGTGGCTGCACCAGCTGCACTGGAGACAAAGGCCGCTG AGCCAGAGACCGTCGCTGCTGCAGCTGCACCAGAAACAAAACCCGCTGAGCCAGAGACCGTCACCACTGCATAG
AA sequence Show only first row Show all	>Lus10034138 pacid=23154726 polypeptide=Lus10034138 locus=Lus10034138.g ID=Lus10034138.BGIv1.0 annot-version=v1.0 MPRLKSAFDSLATRSAFSSILIWVSPDLLIYDFLQPWAPQLASSLLHIPAVLFHCTGAAMIKGRNSQERRRRIEDGGVDEPEDGVTVDGRSNPVWITNHS HPPRPSPPLSLKSPSAMAQTVVLKVAMSCGGCSGAVNRVLSKMEVPQPLTYIKLRFADSLVLFLICVESFDIDMKEQKVTVKGNVEPDAVFQAVSKTGKK TAFWEAEAPAAAETKPAESETVAAPAALETKAAEPETVAAAAAPETKPAEPETVTTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Lus10034138 [exp]	0	1
					Lus10029977 [exp]	3.5	0.9286
AT1G21240		WAK3	wall associated kinase 3 (.1)		Lus10013387 [exp]	7.1	0.8969
					Lus10003616 [exp]	7.7	0.8631
AT4G22758			unknown protein		Lus10006995 [exp]	8.7	0.9015
AT3G24315		ATSEC20	Sec20 family protein (.1)		Lus10014461 [exp]	17.3	0.8207
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10015461 [exp]	18.3	0.8886
AT1G27620			HXXXD-type acyl-transferase fa...		Lus10024278 [exp]	20.9	0.8000
AT1G10280			Core-2/I-branching beta-1,6-N-...		Lus10040972 [exp]	27.1	0.8433
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10038398 [exp]	27.8	0.8856
					Lus10017305 [exp]	28.3	0.8912

Compare expression of checked genes

Lus10034138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.