Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03610 187 / 3e-57 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G09930 174 / 3e-52 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G36325 146 / 3e-41 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G03600 125 / 1e-33 SGNH hydrolase-type esterase superfamily protein (.1) AT5G08460 71 / 8e-14 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G33370 70 / 2e-13 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G20120 69 / 3e-13 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G53920 69 / 7e-13 GLIP5 GDSL-motif lipase 5 (.1) AT1G75920 67 / 1e-12 EXL5 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3.4) AT2G19010 66 / 4e-12 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043441 [exp] 297 / 5e-102 AT5G03610 201 / 1e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10035600 [exp] 198 / 4e-61 AT5G03610 397 / 7e-138 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003253 [exp] 197 / 7e-61 AT5G03610 397 / 2e-138 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028145 [exp] 167 / 2e-49 AT5G03610 234 / 2e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10042849 [exp] 162 / 4e-45 AT5G03610 240 / 1e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011279 [exp] 75 / 9e-15 AT5G20960 1315 / 0.0 ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, aldehyde oxidase alpha, aldehyde oxidase 1 (.1.2) Lus10040791 [exp] 73 / 2e-14 AT5G03810 465 / 2e-165 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10039877 [exp] 70 / 2e-13 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10018641 [exp] 67 / 2e-12 AT5G37690 516 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G237000 [exp] 239 / 2e-77 AT5G03610 352 / 1e-120 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G406500 [exp] 191 / 1e-58 AT5G03610 425 / 3e-149 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G236800 [exp] 153 / 3e-44 AT5G03610 255 / 5e-83 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G236951 [exp] 147 / 5e-42 AT5G03610 244 / 2e-78 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G053100 [exp] 146 / 2e-41 AT5G03610 205 / 3e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G230100 [exp] 125 / 4e-34 AT5G03610 164 / 2e-48 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024800 [exp] 73 / 1e-14 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.013G051100 [exp] 69 / 3e-13 AT5G33370 563 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024600 [exp] 69 / 4e-13 AT5G33370 568 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.017G130100 [exp] 69 / 4e-13 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10034139 pacid=23154709 polypeptide=Lus10034139 locus=Lus10034139.g ID=Lus10034139.BGIv1.0 annot-version=v1.0 ATGTTGCTGCTGCGAAGCTTTTCGTCTTCGGGGACTCGTATGCTGATACGGGTAACTGGGACAAGTCTGCTGGATCCTGGAATCAGGCCCTACGGGATCA CATTCCCTGGAAAACCAGCTGGCCGCTTCTCTGATGGTCGAATCTTCACCGATTATATAGGCAATATAGGTAATAACTATTCATTACCTCATTTCTTCAA CTTGAGCAGGACACCAATATTCAATTCATTACCACGACGTTTTAGTACAGCTTCGTTTCTGGGGATAGAGTCTCCAGTACCCTACACATTGATGACGAAA ATTGCACAAGGGTCTCCTCGTCTTCATTATGGGTTGAACTTCGCTTATGGAGGAACTGGAGTGTTTGACACGTTGATCCGAGCTCCGAATATGGCCGCCC AGATCAATCTTTTCCAGAAGACGATTGAACAAAAAGCATACACTAAACAAGACCTCATCAACTCTTCCGTTGCCCTGGTCTCCATAGCTGGCAACGACTA CTTGACTTACGTCCAGAAAAACGGAAAGCTCCAGGAACTGCCTAATTTGACTAAAAGGGTCATAGCTCAGCTTACCAGCAACCTAATCCTCATCCATGGT GTAGGAGTTGCAAAAGTAGCAGTTACCACATTACCTCCGATTGGCTGTTTGCCATCCGCAACCTATCCCCCTCCAAGGGGCGAAACCTGGAACTCAGCGG CCACATTCCACAACCAGCTGCTCCATGAATCAGTGAAATCACTAAACAGCAGGACCAAGAGTAATGCTTTCCAAGTTCTGGACACATTCAGTGCATTCAT GGATGAGTTGAAGAAATCAAACAACTCAGGTGATCCTTTAACAACTCCACCTATCTCACCGGAACACTAA
AA sequence Show only first row Show all	>Lus10034139 pacid=23154709 polypeptide=Lus10034139 locus=Lus10034139.g ID=Lus10034139.BGIv1.0 annot-version=v1.0 MLLLRSFSSSGTRMLIRVTGTSLLDPGIRPYGITFPGKPAGRFSDGRIFTDYIGNIGNNYSLPHFFNLSRTPIFNSLPRRFSTASFLGIESPVPYTLMTK IAQGSPRLHYGLNFAYGGTGVFDTLIRAPNMAAQINLFQKTIEQKAYTKQDLINSSVALVSIAGNDYLTYVQKNGKLQELPNLTKRVIAQLTSNLILIHG VGVAKVAVTTLPPIGCLPSATYPPPRGETWNSAATFHNQLLHESVKSLNSRTKSNAFQVLDTFSAFMDELKKSNNSGDPLTTPPISPEH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10034139 [exp]	0	1
AT1G53025			Ubiquitin-conjugating enzyme f...		Lus10028151 [exp]	2.4	0.8267
AT2G01130			DEA(D/H)-box RNA helicase fami...		Lus10007938 [exp]	3.0	0.8325
AT4G39680			SAP domain-containing protein ...		Lus10016433 [exp]	4.6	0.8052
AT1G51610			Cation efflux family protein (...		Lus10034818 [exp]	4.9	0.7877
AT3G49055			unknown protein		Lus10027489 [exp]	4.9	0.7073
AT2G19170		SLP3	subtilisin-like serine proteas...		Lus10011018 [exp]	5.7	0.7601
AT2G37960			unknown protein		Lus10027749 [exp]	9.4	0.7386
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10033174 [exp]	10.6	0.7310
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Lus10016724 [exp]	11.8	0.7607
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10037917 [exp]	13.4	0.7684

Compare expression of checked genes

Lus10034139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.