Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51390 353 / 5e-125 ATNFU1, NFU5 NFU domain protein 5 (.1) AT3G20970 352 / 2e-124 ATNFU2, NFU4 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2) AT5G49940 61 / 2e-11 ATCNFU2, NFU2 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2) AT4G25910 52 / 3e-08 ATCNFU3, NFU3 NFU domain protein 3 (.1) AT4G01940 52 / 3e-08 ATCNFU1, NFU1 NFU domain protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043440 [exp] 389 / 3e-138 AT3G20970 383 / 1e-134 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2) Lus10015481 [exp] 57 / 5e-10 AT5G49940 286 / 3e-98 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2) Lus10001439 [exp] 50 / 1e-07 AT4G25910 263 / 2e-89 NFU domain protein 3 (.1) Lus10009999 [exp] 50 / 1e-07 AT4G01940 257 / 8e-87 NFU domain protein 1 (.1) Lus10001634 [exp] 50 / 3e-07 AT4G25910 260 / 7e-87 NFU domain protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G237400 [exp] 343 / 6e-121 AT3G20970 366 / 2e-128 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2) Potri.008G022000 [exp] 230 / 6e-77 AT3G20970 253 / 2e-85 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2) Potri.002G192200 [exp] 52 / 4e-08 AT4G01940 263 / 1e-89 NFU domain protein 1 (.1) Potri.004G222600 [exp] 52 / 6e-08 AT5G49940 293 / 3e-101 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2) Potri.006G165600 [exp] 51 / 6e-08 AT4G25910 300 / 3e-104 NFU domain protein 3 (.1) Potri.003G009300 [exp] 51 / 7e-08 AT5G49940 279 / 1e-95 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2) Potri.014G117700 [exp] 48 / 8e-07 AT4G01940 248 / 1e-83 NFU domain protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08712 [flax] [poplar] Nfu_N Scaffold protein Nfu/NifU N terminal CL0232 [flax] [poplar] NifU PF01106 [flax] [poplar] NifU NifU-like domain
Representative CDS sequence Show only first row Show all	>Lus10034140 pacid=23154690 polypeptide=Lus10034140 locus=Lus10034140.g ID=Lus10034140.BGIv1.0 annot-version=v1.0 ATGTTTATACAAACTCAAAGCACACCAAATCCATCATCTTTAATGTTCCATCCCGGGAAACCGGTGATGGAAGTTGGAAGTTCAGACTTCCCAAATGCTC GTGCAGCCATGACTTCTCCGTTAGCTAAAGCCATCTTTGGAATTGATGGTATTGTCAGGGTCTTCTATGGGTCTGATTTTGTTACAGTCACAAAATCAGA TGACATGTCTTGGGATCTATTGAAACCTGAAATCTTTGCGGCAATCATGGACTTCTATTCTTCTGGGCAACCATTGTTTCTGGACTCGCAAACTGCTTCT GCCAAGGACACAGCTATTCAAGAGGATGACTCGGAAACAGTTGCAATGATAAAAGAGCTGCTGGAAACACGTATTCGACCAGCAGTGCAAGATGATGGTG GAGATATCGAATACTGTGGATTTGATCAGGAAACTGGAATAGTGAAATTAAGAATGCAAGGAGCATGTAGTGGCTGCCCAAGCTCATCTGTGACTTTGAA ATCTGGGATCGAGAATATGCTGATGCACTATGTTTCAGAGGTTAAAGGCGTGGAGCAGGAACTAGATGGCGAAGAAGAAGAAGACAACACATCAGTAGCT GGTTAA
AA sequence Show only first row Show all	>Lus10034140 pacid=23154690 polypeptide=Lus10034140 locus=Lus10034140.g ID=Lus10034140.BGIv1.0 annot-version=v1.0 MFIQTQSTPNPSSLMFHPGKPVMEVGSSDFPNARAAMTSPLAKAIFGIDGIVRVFYGSDFVTVTKSDDMSWDLLKPEIFAAIMDFYSSGQPLFLDSQTAS AKDTAIQEDDSETVAMIKELLETRIRPAVQDDGGDIEYCGFDQETGIVKLRMQGACSGCPSSSVTLKSGIENMLMHYVSEVKGVEQELDGEEEEDNTSVA G

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Lus10034140 [exp]	0	1
AT5G59610			Chaperone DnaJ-domain superfam...		Lus10016510 [exp]	1.0	0.9198
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10029916 [exp]	1.4	0.9016
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Lus10018909 [exp]	1.7	0.8867
AT1G09920			TRAF-type zinc finger-related ...		Lus10028213 [exp]	4.9	0.8730
AT4G34960			Cyclophilin-like peptidyl-prol...		Lus10025052 [exp]	5.5	0.8591
AT4G20330			Transcription initiation facto...		Lus10029563 [exp]	5.7	0.8800
AT3G05000			Transport protein particle (TR...		Lus10033832 [exp]	6.0	0.8664
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Lus10032605 [exp]	6.2	0.8547
AT1G12390			Cornichon family protein (.1)		Lus10004320 [exp]	9.5	0.8551
AT2G26600			Glycosyl hydrolase superfamily...		Lus10006659 [exp]	10.0	0.8481

Compare expression of checked genes

Lus10034140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.