Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10770 161 / 1e-45 Single-stranded nucleic acid binding R3H protein (.1.2) AT3G56680 159 / 2e-44 Single-stranded nucleic acid binding R3H protein (.1) AT2G40960 153 / 2e-42 Single-stranded nucleic acid binding R3H protein (.1) AT5G05100 152 / 3e-42 Single-stranded nucleic acid binding R3H protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043439 [exp] 717 / 0 AT3G56680 178 / 3e-51 Single-stranded nucleic acid binding R3H protein (.1) Lus10027292 [exp] 163 / 6e-46 AT3G56680 329 / 8e-112 Single-stranded nucleic acid binding R3H protein (.1) Lus10038997 [exp] 161 / 3e-45 AT3G56680 327 / 5e-111 Single-stranded nucleic acid binding R3H protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G237500 [exp] 486 / 5e-170 AT3G56680 171 / 4e-49 Single-stranded nucleic acid binding R3H protein (.1) Potri.008G021900 [exp] 479 / 2e-167 AT3G56680 192 / 4e-57 Single-stranded nucleic acid binding R3H protein (.1) Potri.006G034700 [exp] 175 / 2e-50 AT3G56680 383 / 8e-133 Single-stranded nucleic acid binding R3H protein (.1) Potri.016G032500 [exp] 169 / 2e-48 AT3G56680 375 / 1e-129 Single-stranded nucleic acid binding R3H protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034141 pacid=23154787 polypeptide=Lus10034141 locus=Lus10034141.g ID=Lus10034141.BGIv1.0 annot-version=v1.0 ATGGAGGGCTCTGTGTCAGATGATCTCGGAGCCCCGGATTCATGGGAGTTGGCCGATTTGGACGATACTATGAACCGTTTAAAGCTCAAGGACTCCGAGC TACAATCGACTCAGCTGGAACTCCCTGACGATTTGGCTTCGGCTCCAACTGGTCTTTCTTCCGGCTCTGTCCGGGTTGGCGGAGGCAGAGTATCGGAGGA CGCTATCGACCAAGTGGATCAGTTCCTCAGGGAGGCCTTGCAGAACCCTCGTGAGCGACTCTCTGTTCTGAGAATGGAGCAAGATATTGAGAAGTTTATT CGTGACCCAACACAACAGCAACTCGAATTTCAGCAACTTCCTACTTCATATTTGAGATTGGCTGCACATCGTGTGGCGCAGCATTATTCACTACAATCAA TGGTTTTGTTGGACAACAGTTTGCCTGATGGTTCTGGTTCAAGAATCATTGTTCACAAGGCTGCTGGATGCCGGATTCCTTTGATTCGCCTAGCTGACAT CCCTGTGAATTTGCCATCTGAAGATGGCAGTTCCGTGAAAGTTGCAATTAAACAGAGGCCACGGAAACAGTCTCAAACTGCAAACAGTTCTAATTCAAAT TCATCAAAATCAAGTGGTTCCAAGAGTATGGAGGAAAGGAAAGAGGAATACAACAAGGCACGTGCTCGAATATTTAATTCCACCAATCATAGTGGTAATT CTACTGGGAATGCAGAAAGTGAACCAAGGAGACAAGATATTCCACGGCTGGTTTCAGTTGGTTCAGAAAATGGCCAGGCTAAATCTGCTTTAGGAAATTC TGGTATTAACCAGGGAAGGGGTGTAATTGAACCCTCTACTAGCACCCCTAGATTGCCAAGACCGAGGATGGAAAATGAGCCAATTATCAGGCCTAGGCCT AATATTATTAATAATAATAAGGTGGCCATATTTCGGGATCGTGAAGTTGATAGGAAGGATCCTGATTATGACAGAAGTTATGACAGTGGAGGACCTTACA CCATCCAGCCTATGTATGCCCCTGCATTGAGTTACAATACTGAATTCCCACAACTTGGAGCTTGTCATAGGCCCCAGATGCCAACAGAACACCAGCCACG CCCTCTTCCACAGCATTTAGTAGGGACATGGGTTGCACAATCAGCCCCTGCCGGATTAGGTTATGGTCATCCAGAAACAATGATGCCACCCTACAGTCCA CATCATATGGGTATGCGACCTAATTCTGGTCTGTATATGCATTCCTCTCAATACCCTTGTCAGCGCCCAGGAATGTCTTTTATCAATCCTCATGACCATA TTCAACAACCCTTTGCACAGTCTCAACAACCGCAATCTGATGCCAGTTTTGGATTAGCCCGGCCCCGATGA
AA sequence Show only first row Show all	>Lus10034141 pacid=23154787 polypeptide=Lus10034141 locus=Lus10034141.g ID=Lus10034141.BGIv1.0 annot-version=v1.0 MEGSVSDDLGAPDSWELADLDDTMNRLKLKDSELQSTQLELPDDLASAPTGLSSGSVRVGGGRVSEDAIDQVDQFLREALQNPRERLSVLRMEQDIEKFI RDPTQQQLEFQQLPTSYLRLAAHRVAQHYSLQSMVLLDNSLPDGSGSRIIVHKAAGCRIPLIRLADIPVNLPSEDGSSVKVAIKQRPRKQSQTANSSNSN SSKSSGSKSMEERKEEYNKARARIFNSTNHSGNSTGNAESEPRRQDIPRLVSVGSENGQAKSALGNSGINQGRGVIEPSTSTPRLPRPRMENEPIIRPRP NIINNNKVAIFRDREVDRKDPDYDRSYDSGGPYTIQPMYAPALSYNTEFPQLGACHRPQMPTEHQPRPLPQHLVGTWVAQSAPAGLGYGHPETMMPPYSP HHMGMRPNSGLYMHSSQYPCQRPGMSFINPHDHIQQPFAQSQQPQSDASFGLARPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56680			Single-stranded nucleic acid b...		Lus10034141 [exp]	0	1
AT5G19400		SMG7	Telomerase activating protein ...		Lus10009689 [exp]	4.6	0.7665
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10008276 [exp]	13.9	0.7121
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10033817 [exp]	15.4	0.7057
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Lus10008957 [exp]	23.2	0.6855
AT1G31430			Pentatricopeptide repeat (PPR-...		Lus10002288 [exp]	28.5	0.6802
AT5G22450			unknown protein		Lus10020607 [exp]	37.5	0.7010
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Lus10017464 [exp]	45.7	0.6366
AT2G15900			Phox-associated domain;Phox-li...		Lus10027939 [exp]	46.0	0.6558
AT4G02480			AAA-type ATPase family protein...		Lus10010282 [exp]	46.5	0.6728
AT1G80950			Phospholipid/glycerol acyltran...		Lus10003950 [exp]	51.4	0.6746

Compare expression of checked genes

Lus10034141 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.