Plant FIBer expression Database

Lus10034142 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G04710 745 / 0 Zn-dependent exopeptidases superfamily protein (.1)
AT5G60160 561 / 0 Zn-dependent exopeptidases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022460
[exp]
532 / 0 AT5G60160 800 / 0.0 Zn-dependent exopeptidases superfamily protein (.1)
Lus10016765
[exp]
523 / 0 AT5G60160 774 / 0.0 Zn-dependent exopeptidases superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G021700
[exp]
780 / 0 AT5G04710 785 / 0.0 Zn-dependent exopeptidases superfamily protein (.1)
Potri.012G095200
[exp]
549 / 0 AT5G60160 810 / 0.0 Zn-dependent exopeptidases superfamily protein (.1)
Potri.015G092700
[exp]
537 / 0 AT5G60160 818 / 0.0 Zn-dependent exopeptidases superfamily protein (.1)
Potri.010G237667
[exp]
71 / 3e-15 AT5G04710 54 / 7e-10 Zn-dependent exopeptidases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0035 Peptidase_MH PF02127 Peptidase_M18 Aminopeptidase I zinc metalloprotease (M18)
Representative CDS sequence
>Lus10034142 pacid=23154717 polypeptide=Lus10034142 locus=Lus10034142.g ID=Lus10034142.BGIv1.0 annot-version=v1.0
ATGGCAGCGGTTGCGCGGTTGCAGCTTCTTCACCCTTCTCCCAGTCTCAAACCCACCTCGCTGTTTCGCTCCAGTCTCCATTGCTCGTCCTTCAATCTCC
TCCGTCTCCACAATTCCTCGTCCGCCACTCGTCCTCTCTGCACTGCCTCCAGCCAATCCCAACCGAGTCGTGGATCCATCGTTAGCGAGTTCCTCGACTA
TCTGAATGAGTCTTGGACTCAATTTCATGCTACTGCGGAAGCCAAAAGGCAACTACTTGCTGCTGGTTTCTACTTGCTTAACGAGAATGATGACTGGGAC
TTGAAACCTGGGGGACGTTACTTCTTTACACGGAACATGTCCTGTTTGATTGCATTTGCAATTGGCGAGAAGTACAATGCGGGAAGTGGTTTTCATGTGA
TAGCTGCCCATACAGACAGTCCATGCCTGAAGCTTAAACCTAAATCTGCATCCTCAAAATCTAGTTATCTAATGGTCAATGTGCAAACCTATGGGTCTGG
CTTGTGGCACACTTGGTTTGATAGGGATCTGAGTGTTGCGGGAAGGGTAATTGTGAAAGATCCCAATGGCTCGTTTAAGCATCAGCTTGTCAAAGTAAAA
AGACCTTTGCTGCGAGTACCAACACTGGCTATTCATCTTGATCGCACAATCAATACGGATGGCTTCAAGCCGAACCTAGAGACTCATCTTGTCCCACTAC
TTGCTGTGAAACCTGGGAAAGTGCCTCTTGAATCAGGCGAAAAAAATAATGCATCCCGGAAAGATGCTCATCATCCTCTTCTTATGCAGGTATTATCGGA
GGAGCTGAATTGCAGAGCTAATGATATAGTCAGTATTGAGTTAAATATTTGCGATACCCAACCTAGTTGCCTTGGAGGTGGAAATGACGAGTTCATTTTT
TCGGGAAGATTAGATAATCTTGCTTCAACTTTTTGTGCATTGAGAGCTTTTATTGATTCATCTGAATCATCAACTTCTTTGTCTAGTGAGCCAGCTATTC
GCATGACGGCGTTATTCGACAATGAAGAGGTGGGCTCAGATTCTGCTCAAGGAGCTGGTGCACCAACTATGTTTCAAGCTATGCGAAGAATAGTTGGGTG
CATGGCTCAGAACAAAGTTGGTGAAGGTGCTGTTGAGCGTGCAATTCGGAAATCCTTCCTTGTATCTGCAGACATGGCTCATGGGATTCATCCAAATTAT
ATGGACAAGCATGAAGAACACCATCGGCCAGAAATGCAGCGGGGACTTGTAATCAAGCACAATGCTAACCAGCGCTATGCGACTAGTGGAATTACAGCTT
TCCTTTTCAACGAAGTTGCCAAAATCCACAACCTTCCTCCTACACAGGAATTCGTGGTTAGAAATGACATGGCATGTGGATCCACCATAGGTCCTATCTT
GGCCTCAGGAGTTGGAATCCGAACAGTTGATTGTGGTATTCCGCAACTTTCCATGCACAGTGTAAGAGAAGTTTGTGCAAAGGAAGACATAGATATTGCT
TACAAGCATTTCAAAGCATTCTACGAAAGCTTTTCGAGTGTAGACAAGAAACTGCAGGTGGATTGA
AA sequence
>Lus10034142 pacid=23154717 polypeptide=Lus10034142 locus=Lus10034142.g ID=Lus10034142.BGIv1.0 annot-version=v1.0
MAAVARLQLLHPSPSLKPTSLFRSSLHCSSFNLLRLHNSSSATRPLCTASSQSQPSRGSIVSEFLDYLNESWTQFHATAEAKRQLLAAGFYLLNENDDWD
LKPGGRYFFTRNMSCLIAFAIGEKYNAGSGFHVIAAHTDSPCLKLKPKSASSKSSYLMVNVQTYGSGLWHTWFDRDLSVAGRVIVKDPNGSFKHQLVKVK
RPLLRVPTLAIHLDRTINTDGFKPNLETHLVPLLAVKPGKVPLESGEKNNASRKDAHHPLLMQVLSEELNCRANDIVSIELNICDTQPSCLGGGNDEFIF
SGRLDNLASTFCALRAFIDSSESSTSLSSEPAIRMTALFDNEEVGSDSAQGAGAPTMFQAMRRIVGCMAQNKVGEGAVERAIRKSFLVSADMAHGIHPNY
MDKHEEHHRPEMQRGLVIKHNANQRYATSGITAFLFNEVAKIHNLPPTQEFVVRNDMACGSTIGPILASGVGIRTVDCGIPQLSMHSVREVCAKEDIDIA
YKHFKAFYESFSSVDKKLQVD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G04710 Zn-dependent exopeptidases sup... Lus10034142
[exp]
0 1
AT3G03710 PDE326, PNP, RI... resistant to inhibition with F... Lus10013636
[exp]
2.6 0.9531
AT5G02860 Pentatricopeptide repeat (PPR)... Lus10002107
[exp]
3.0 0.9305
AT3G03710 PDE326, PNP, RI... resistant to inhibition with F... Lus10001332
[exp]
3.2 0.9463
AT5G02860 Pentatricopeptide repeat (PPR)... Lus10013894
[exp]
4.5 0.9189
AT5G04810 pentatricopeptide (PPR) repeat... Lus10008969
[exp]
5.2 0.9094
AT3G48110 EDD1 EMBRYO-DEFECTIVE-DEVELOPMENT 1... Lus10042915
[exp]
6.9 0.9211
AT1G54560 PCR1, ATXIE, XI... MYOSIN XI E, Myosin family pro... Lus10005521
[exp]
11.0 0.8907
AT3G03710 PDE326, PNP, RI... resistant to inhibition with F... Lus10001331
[exp]
11.2 0.9163
AT5G16715 EMB2247 embryo defective 2247, ATP bin... Lus10009139
[exp]
12.6 0.9109
AT5G04810 pentatricopeptide (PPR) repeat... Lus10034149
[exp]
13.4 0.8722

Lus10034142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.