Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54300 315 / 1e-106 ATVAMP727 vesicle-associated membrane protein 727 (.1.2) AT2G44050 261 / 9e-86 COS1 coronatine insensitive1 suppressor, COI1 SUPPRESSOR1, 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase (.1) AT1G04760 239 / 3e-77 ATVAMP726 vesicle-associated membrane protein 726 (.1) AT1G04750 235 / 2e-75 ATVAMP7B, ATVAMP721, VAMP7B VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) AT2G32670 237 / 3e-75 ATVAMP725 vesicle-associated membrane protein 725 (.1) AT2G33120 233 / 7e-75 ATVAMP722, SAR1 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) AT4G15780 197 / 5e-61 ATVAMP724 vesicle-associated membrane protein 724 (.1) AT2G33110 186 / 2e-56 ATVAMP723 vesicle-associated membrane protein 723 (.1) AT5G11150 133 / 2e-36 ATVAMP713 vesicle-associated membrane protein 713 (.1) AT4G32150 133 / 2e-36 ATVAMP711, VAMP7C vesicle-associated membrane protein 711 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043431 [exp] 364 / 3e-123 AT3G54300 325 / 9e-111 vesicle-associated membrane protein 727 (.1.2) Lus10028541 [exp] 281 / 3e-93 AT2G44050 288 / 2e-99 coronatine insensitive1 suppressor, COI1 SUPPRESSOR1, 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase (.1) Lus10018133 [exp] 279 / 2e-92 AT2G44050 289 / 1e-99 coronatine insensitive1 suppressor, COI1 SUPPRESSOR1, 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase (.1) Lus10025933 [exp] 239 / 4e-77 AT1G04760 381 / 2e-136 vesicle-associated membrane protein 726 (.1) Lus10036203 [exp] 239 / 4e-77 AT1G04760 367 / 1e-130 vesicle-associated membrane protein 726 (.1) Lus10011870 [exp] 239 / 7e-77 AT1G04760 376 / 3e-134 vesicle-associated membrane protein 726 (.1) Lus10038166 [exp] 238 / 1e-76 AT1G04760 383 / 3e-137 vesicle-associated membrane protein 726 (.1) Lus10022804 [exp] 238 / 2e-76 AT1G04760 377 / 1e-134 vesicle-associated membrane protein 726 (.1) Lus10038342 [exp] 237 / 4e-76 AT1G04760 366 / 3e-130 vesicle-associated membrane protein 726 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G019400 [exp] 320 / 1e-108 AT3G54300 407 / 3e-146 vesicle-associated membrane protein 727 (.1.2) Potri.010G239900 [exp] 310 / 1e-104 AT3G54300 387 / 6e-138 vesicle-associated membrane protein 727 (.1.2) Potri.017G001800 [exp] 278 / 2e-92 AT2G44050 291 / 1e-100 coronatine insensitive1 suppressor, COI1 SUPPRESSOR1, 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase (.1) Potri.007G146000 [exp] 272 / 7e-90 AT2G44050 279 / 6e-96 coronatine insensitive1 suppressor, COI1 SUPPRESSOR1, 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase (.1) Potri.003G177700 [exp] 240 / 1e-77 AT1G04750 389 / 1e-139 VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) Potri.002G240900 [exp] 239 / 5e-77 AT2G33120 355 / 3e-126 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.012G119600 [exp] 237 / 3e-76 AT2G33120 363 / 2e-129 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.015G118300 [exp] 235 / 1e-75 AT2G33120 359 / 8e-128 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.001G050400 [exp] 227 / 2e-72 AT2G33120 365 / 4e-130 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.008G209100 [exp] 196 / 3e-60 AT4G15780 367 / 9e-131 vesicle-associated membrane protein 724 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00957 [flax] [poplar] Synaptobrevin Synaptobrevin CL0445 [flax] [poplar] PF00885 [flax] [poplar] DMRL_synthase 6,7-dimethyl-8-ribityllumazine synthase
Representative CDS sequence Show only first row Show all	>Lus10034145 pacid=23154772 polypeptide=Lus10034145 locus=Lus10034145.g ID=Lus10034145.BGIv1.0 annot-version=v1.0 ATGGCTGGTAGGGGATTGATATATAGCTTTGTGGCAAGGGGGACTGTTGTGTTGGCAGAGCACACATCTTACTCTGGGAACTTCAGTACCGTAGCGGGTC AGTGCTTACAGAAACTTCCTCCAAATAGCAGCAAGTACACTTACTCATGTGATGGCCACACCTTTAACTTCCTAAAAGACGATGCCTTTGTCTTCCTTGT TGTTGCGGATGAGACCGTGGGAAGGGCGGTGCCCTTTGTGTTTCTTGAGCGCGTGAAGGATGACTTCAAACAGCGTTACGCGACGAATATTAAAAACGAG GAGCACCCTCTTGTTGATGACGAAGATGATGACTTGTTTGAAGATCGGTTTAGCATTGCTTACAATCTTGATAGAGACTTTGGGCCAAAGCTTAAAGAGC ATATGCAGTACTGTATGGAACATCCCGAGGAGATTAGTAAGCTGTCCAAATTGAAGGCTCAAATCACCGAAGTCAAGGGAATTATGATGGACAACATCGA GAAGGTTTTGGATCGTGGGGAGAAGATAGAGCTTCTGGTTGATAAAACAGAGAATCTACAGTTTCAGTTTCCAAAGGCAAGGAAGGCAGTTGAGAAGGAA GATGTGGTTGCAGAATCTGCAGATGAAGTTGATGATAGTTGGAGTAATCCTGGTCTTAATCATCATACTCTGGCTACTCGTTTGCCGCGGTTTCAAATGT TAAATTCGAGCCCCCTGTTCTGTCTAATATCTGTAGAATTCAAGATAGTCTGCACTTGGCTTGTGTTTTGCTGTCCTTGTTCACGGTGGTATAGGAATGC TCTTCCCACTCTTACTACTACTACTTCCAGGCGCGCACCGGAAGCAGTTCGGCATCTTACCGGCTCAGTCTTACAACCTGAAGGTCTCCGTTTTGCTTTG GTTGTTGCTCGGTTCAATGAGATCGTTACTAGGCCGCTTTTGGAAGGAGCTATCGACACTTTCGGAAGGTATTCCGTCCCGGAAGAGAATATTGATGTTG TGTGGGTTCCTGGTTGTTTCGAAGTAGGGTTAGCCGCAGATAGACTAGGCAAGTCAGGCAAGTACAACGCAGTGGTGTGCATTGCAGCTGTGGTAAGAGG CGACACCTCTCACTACGATGCAGTTGCAAACTCAGCTGCATCCGGAGTCCTCTCGGCTGGTCTCAATTCAGGAGTCCCGTGTATATTCGGTGTTCTTACC TGTGATAACATGGACCAGGCTATTAATCGTGCCGGTGGGAAGGTTGGGAACAAAGGTTCAGAAGCTGCATTGACTGCTCTGGAGATGGCATCTCTGTTTG AGCATCATTTGAAGTAA
AA sequence Show only first row Show all	>Lus10034145 pacid=23154772 polypeptide=Lus10034145 locus=Lus10034145.g ID=Lus10034145.BGIv1.0 annot-version=v1.0 MAGRGLIYSFVARGTVVLAEHTSYSGNFSTVAGQCLQKLPPNSSKYTYSCDGHTFNFLKDDAFVFLVVADETVGRAVPFVFLERVKDDFKQRYATNIKNE EHPLVDDEDDDLFEDRFSIAYNLDRDFGPKLKEHMQYCMEHPEEISKLSKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQFPKARKAVEKE DVVAESADEVDDSWSNPGLNHHTLATRLPRFQMLNSSPLFCLISVEFKIVCTWLVFCCPCSRWYRNALPTLTTTTSRRAPEAVRHLTGSVLQPEGLRFAL VVARFNEIVTRPLLEGAIDTFGRYSVPEENIDVVWVPGCFEVGLAADRLGKSGKYNAVVCIAAVVRGDTSHYDAVANSAASGVLSAGLNSGVPCIFGVLT CDNMDQAINRAGGKVGNKGSEAALTALEMASLFEHHLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54300		ATVAMP727	vesicle-associated membrane pr...		Lus10034145 [exp]	0	1
AT3G54300		ATVAMP727	vesicle-associated membrane pr...		Lus10043431 [exp]	5.8	0.8333
AT5G01970			unknown protein		Lus10031947 [exp]	6.0	0.8596
AT5G28050			Cytidine/deoxycytidylate deami...		Lus10015942 [exp]	6.9	0.8640
AT5G25265			unknown protein		Lus10041028 [exp]	7.1	0.8550
AT5G26751		ATSK11 ,SK 11	ARABIDOPSIS THALIANA SHAGGY-RE...		Lus10001519 [exp]	8.0	0.8753
AT1G48140		DPMS3	dolichol phosphate mannose syn...		Lus10011837 [exp]	9.0	0.8487
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10036280 [exp]	19.6	0.8502
AT2G17990			unknown protein		Lus10041920 [exp]	22.6	0.8554
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10011113 [exp]	23.5	0.8246
AT4G28300			Protein of unknown function (D...		Lus10031645 [exp]	26.4	0.8238

Compare expression of checked genes

Lus10034145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.