Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54250 666 / 0 GHMP kinase family protein (.1) AT2G38700 636 / 0 ATMVD1, MVD1 mevalonate diphosphate decarboxylase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043438 [exp] 865 / 0 AT3G54250 681 / 0.0 GHMP kinase family protein (.1) Lus10008966 [exp] 729 / 0 AT3G54250 668 / 0.0 GHMP kinase family protein (.1) Lus10028855 [exp] 682 / 0 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G237900 [exp] 733 / 0 AT3G54250 688 / 0.0 GHMP kinase family protein (.1) Potri.008G021100 [exp] 722 / 0 AT3G54250 683 / 0.0 GHMP kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF00288 [flax] [poplar] GHMP_kinases_N GHMP kinases N terminal domain
Representative CDS sequence Show only first row Show all	>Lus10034147 pacid=23154685 polypeptide=Lus10034147 locus=Lus10034147.g ID=Lus10034147.BGIv1.0 annot-version=v1.0 ATGGCGGATAAATGGGTTAGGATGGTGACGGCGCAAACGCCCACCAATATAGCCGTGATCAAGTACTGGGGAAAGAGGGATGAGACCTTGATTTTGCCCG TCAATGACAGCATTAGCGTCACTTTGGATCCCGCTCATCTCTGTACTACAACCACTGTTGCTGTCAGTCCCAGCTTCGCTCAGGATCGGATGTGGCTTAA TGGCAAGGAGGTTTCTCTCTCAGGAGCTAGGTATCAGAATTGTTTGAGAGAAATCCGTAGCCGTGCTTGTGATGTTGAGGATGAGGAAAAGGGTATCAGG ATAGAGAAGAAGGACTGGCAAAATTTGCACGTCCACATTGCTTCCTACAATAATTTCCCCACTGCTGCTGGATTGGCTTCATCTGCAGCGGGGTTTGCAT GTCTTGTTTTCTCCCTTGCAAAGCTAATGAACGCAAAAGAAGATAACAGCGATCTTTCTGCAATTGCTAGGCAAGGTTCTGGGAGTGCCTGCCGCAGTCT ATTTGGTGGATTCGTAAAATGGATCATGGGAGAGGCTAGTGATGGGCATGATAGCCTTGCTGTTCAGCTGGTGGACGAGAAACACTGGGATGAACTTGTT ATAATTATAGCTGTGGTAAGTTCGCGGCAGAAAGAAACAAGTAGCACATCAGGAATGCGGGAAAGTGTTGAAACTAGTTTGCTTTTGCAGCATCGAGCAA AGGAAATTGTACCAAAAAGAATTGTCCAAATGGAGGAGGCCATAAAGAACAAGGATTTTGTTTCCTTCACAGAGTTAACCTGTGCTGATAGTAATCAGTT CCATGCAGTGTGCCTCGACACTTGTCCGCCAATATTCTACATGAATGATACATCCCACAGGCAAGTCAGCAGGCTGTTTCATCTAACATGGAAATGTTTT GAATTTTCTTCATCTTTTAGGGTAATCAGCTGCGTCGAGAAATGGAATAGATCTGTAGGAACACCTCAGGTAGCTTACACCTTCGATGCTGGGCCGAATT CTGTCCTTATTGCACGTAACCGGAAGGCTGCAGCTGAGCTTTTGCAAAAGCTGCTCTTCTACTTCCCTCCAAACTCGGATGCAGATTTGAACAATTATGT GATTGGAGACAAATCGATTCTTAAAGATGCCGGAATTGAAGGGATGAAGGACGTGGAAACTCTAGCACCACCCCCAGAAAACAAGGATGCTCAGAGATAC AAAGATGGCGTTAGCTACTTCATTTGTACAAGACCCGGCAAAGGTCCCGTGTTGCTGGCGGATGAGAGTCAGGCCCTTCTCAACGCGGAAACCGGGCTTC CCAAATAG
AA sequence Show only first row Show all	>Lus10034147 pacid=23154685 polypeptide=Lus10034147 locus=Lus10034147.g ID=Lus10034147.BGIv1.0 annot-version=v1.0 MADKWVRMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPAHLCTTTTVAVSPSFAQDRMWLNGKEVSLSGARYQNCLREIRSRACDVEDEEKGIR IEKKDWQNLHVHIASYNNFPTAAGLASSAAGFACLVFSLAKLMNAKEDNSDLSAIARQGSGSACRSLFGGFVKWIMGEASDGHDSLAVQLVDEKHWDELV IIIAVVSSRQKETSSTSGMRESVETSLLLQHRAKEIVPKRIVQMEEAIKNKDFVSFTELTCADSNQFHAVCLDTCPPIFYMNDTSHRQVSRLFHLTWKCF EFSSSFRVISCVEKWNRSVGTPQVAYTFDAGPNSVLIARNRKAAAELLQKLLFYFPPNSDADLNNYVIGDKSILKDAGIEGMKDVETLAPPPENKDAQRY KDGVSYFICTRPGKGPVLLADESQALLNAETGLPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54250			GHMP kinase family protein (.1...		Lus10034147 [exp]	0	1
AT2G04400			Aldolase-type TIM barrel famil...		Lus10006354 [exp]	1.0	0.9771
AT2G45290			Transketolase (.1)		Lus10004750 [exp]	2.4	0.9664
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10018156 [exp]	2.4	0.9651
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10035723 [exp]	3.5	0.9581
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10013788 [exp]	4.2	0.9615
AT1G62500			Bifunctional inhibitor/lipid-t...		Lus10032262 [exp]	4.5	0.9619
AT2G35350		PLL1	poltergeist like 1 (.1)		Lus10004554 [exp]	5.2	0.9505
AT1G47490		ATRBP47C	RNA-binding protein 47C (.1.2)		Lus10021754 [exp]	5.5	0.9558
AT3G63200		PLP9, PLAIIIB ,...	PATATIN-like protein 9 (.1)		Lus10022040 [exp]	6.6	0.9592
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10007385 [exp]	7.5	0.9608

Compare expression of checked genes

Lus10034147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.