Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36290 436 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1) AT3G48410 433 / 5e-152 alpha/beta-Hydrolases superfamily protein (.1) AT1G74300 428 / 1e-150 alpha/beta-Hydrolases superfamily protein (.1) AT1G74280 410 / 3e-143 alpha/beta-Hydrolases superfamily protein (.1) AT1G74290 406 / 8e-142 alpha/beta-Hydrolases superfamily protein (.1) AT3G54240 394 / 5e-137 alpha/beta-Hydrolases superfamily protein (.1) AT5G22460 357 / 1e-122 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G03240 302 / 2e-101 alpha/beta-Hydrolases superfamily protein (.1) AT3G03230 286 / 3e-95 alpha/beta-Hydrolases superfamily protein (.1) AT1G08310 274 / 1e-90 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043437 [exp] 707 / 0 AT2G36290 429 / 5e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10008968 [exp] 583 / 0 AT2G36290 442 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1) Lus10018549 [exp] 536 / 0 AT2G36290 434 / 8e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10041666 [exp] 531 / 0 AT2G36290 440 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10039775 [exp] 528 / 0 AT2G36290 425 / 3e-149 alpha/beta-Hydrolases superfamily protein (.1) Lus10028860 [exp] 450 / 2e-159 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10034135 [exp] 422 / 3e-148 AT3G48410 396 / 9e-138 alpha/beta-Hydrolases superfamily protein (.1) Lus10017051 [exp] 423 / 4e-148 AT3G48410 489 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10043449 [exp] 418 / 1e-146 AT3G48410 395 / 2e-137 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G237700 [exp] 466 / 1e-165 AT2G36290 452 / 6e-160 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021200 [exp] 462 / 2e-164 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021000 [exp] 463 / 6e-164 AT2G36290 441 / 5e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237800 [exp] 457 / 4e-162 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021400 [exp] 453 / 2e-160 AT2G36290 446 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G164900 [exp] 395 / 6e-138 AT5G22460 374 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G203700 [exp] 375 / 8e-130 AT5G22460 434 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G164600 [exp] 323 / 1e-109 AT3G44510 440 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G131300 [exp] 136 / 7e-36 AT5G02970 658 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G086200 [exp] 134 / 6e-35 AT5G02970 653 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10034148 pacid=23154844 polypeptide=Lus10034148 locus=Lus10034148.g ID=Lus10034148.BGIv1.0 annot-version=v1.0 ATGCTGCAACAAGCTTCCTTGGTGGCGGCGATCGGATTCCTAACTTGGATCTACCAGTCTTTCATCCGACCACCTCCTCCCAAGATTTGTGGCTCTCCCG GCGGACCTCCGGTAACTTCTCCTCGCATTAAGCTCCGGGACGGCCGCCACCTGGCCTACAAGGAGCACGCCGCCGTCCCTAAACACATCGCCAAGTTCAA GGTCATCTTCATCCATGGATTCACCTCCAGCCGCCTCGATCCCATGATTCAAGACAACCTCTCTCCGGAGGCGATCGAGGAGCTGAGTGTTTATGTGTTG ACCTTTGATCGCCCGGGATACGGCGAGAGTGACCCGGATCCGAACCGGACTCCCCGGAGTTTGGCCTTGGACATTGAAGAGCTGGCTGATCAGTTGGGCC TGGGCCCTAAGTTCTATGTCATGGGCAAGTCGATGGGCGGCCAGGTCGTTTGGGGTTGCCTGAAATACATCCCTCACAGGCTGGCAGGGGCAGCCTTAGT GGCGCCGGTGATAAACCACTGGTGGCGGAGTTTCCCGGCGGAGCTGAGCAAGAAGGCGTACAATTCGCAGCTGGCGCAGGACCAGTGGGCCCTGAGAGTG GCCCATTATGCACCATGGCTCACCTACTGGTGGAACACCCAGAAGCTGTTCCCAACCTCTGGCGTCATAGCTAGGAAACGCGAGACACTTTCCTCACAGG ATGTCCAGCTCATTTCCCAGCACGGCAACGACCCTAAACTCAAGAATGTGGCGACGCAGCAGGGAGTGTACGAGTCGCTGCACAGGGACTTGATGATAGG GTTCGGGAAGTGGGAGTTCGACCCGATGGAGATTGAGAATCCATTCCCTAACAACCAAGGTTCGGTCCATCTGTGGCAAGGAGACGAAGACATGAAGGTT TCGGTGGAGCTGCAGCGTTACATTGCTAAGAGACTTCCATGGATTCAGTACCATGAGCTTCCTGGAGGGGGGCATATTCTCCATTTCGTTCCTGGGTTGA TTGAAGGTGTCCTCAGAGCTCTTTTAGTCGAACCACAGAGTCACAGAGATGACTAG
AA sequence Show only first row Show all	>Lus10034148 pacid=23154844 polypeptide=Lus10034148 locus=Lus10034148.g ID=Lus10034148.BGIv1.0 annot-version=v1.0 MLQQASLVAAIGFLTWIYQSFIRPPPPKICGSPGGPPVTSPRIKLRDGRHLAYKEHAAVPKHIAKFKVIFIHGFTSSRLDPMIQDNLSPEAIEELSVYVL TFDRPGYGESDPDPNRTPRSLALDIEELADQLGLGPKFYVMGKSMGGQVVWGCLKYIPHRLAGAALVAPVINHWWRSFPAELSKKAYNSQLAQDQWALRV AHYAPWLTYWWNTQKLFPTSGVIARKRETLSSQDVQLISQHGNDPKLKNVATQQGVYESLHRDLMIGFGKWEFDPMEIENPFPNNQGSVHLWQGDEDMKV SVELQRYIAKRLPWIQYHELPGGGHILHFVPGLIEGVLRALLVEPQSHRDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10034148 [exp]	0	1
AT1G07710			Ankyrin repeat family protein ...		Lus10003748 [exp]	2.4	0.8720
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10038322 [exp]	2.6	0.8553
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10004891 [exp]	7.9	0.8735
AT4G32760			ENTH/VHS/GAT family protein (....		Lus10022140 [exp]	8.7	0.8660
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10010203 [exp]	8.7	0.8749
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10037172 [exp]	12.8	0.8715
AT5G65660			hydroxyproline-rich glycoprote...		Lus10002158 [exp]	14.0	0.8143
AT4G28300			Protein of unknown function (D...		Lus10031645 [exp]	14.7	0.8412
AT1G64060		RBOHAP108, ATRB...	ARABIDOPSIS THALIANA RESPIRATO...		Lus10017527 [exp]	14.7	0.8458
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10036280 [exp]	18.5	0.8522

Compare expression of checked genes

Lus10034148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.