Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04810 1131 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G62670 228 / 4e-64 RPF2 rna processing factor 2 (.1) AT1G63400 225 / 2e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63330 224 / 3e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 225 / 4e-63 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63080 223 / 1e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 223 / 2e-61 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63150 219 / 8e-61 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65560 220 / 1e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 215 / 6e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043434 [exp] 1472 / 0 AT5G04810 1108 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10008969 [exp] 1098 / 0 AT5G04810 1121 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10028850 [exp] 719 / 0 AT5G04810 689 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10028851 [exp] 342 / 2e-109 AT5G04810 312 / 3e-98 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10008650 [exp] 236 / 1e-65 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10007468 [exp] 232 / 7e-65 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039056 [exp] 229 / 3e-63 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019524 [exp] 229 / 4e-63 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 220 / 6e-60 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G017400 [exp] 1240 / 0 AT5G04810 1278 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.010G241300 [exp] 1226 / 0 AT5G04810 1230 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.016G025600 [exp] 245 / 7e-70 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 246 / 1e-69 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 237 / 4e-65 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G069600 [exp] 231 / 1e-64 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G139300 [exp] 231 / 4e-64 AT5G01110 275 / 1e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046200 [exp] 227 / 7e-64 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G250700 [exp] 229 / 3e-63 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050400 [exp] 225 / 3e-63 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10034149 pacid=23154764 polypeptide=Lus10034149 locus=Lus10034149.g ID=Lus10034149.BGIv1.0 annot-version=v1.0 ATGGATATCCTTTCCATCTCCGCCGCTACATCACTCTCCTTCCCCACCGCCGCCGGCAAAAGACCTCCCTATCTACTTCCTCCTACTTCCGCCTCTCTCT CCCCCAACCCACCCCCAACTCCTCCGCCGTCCCAATCACCCAACCCAAATACCTCCTCTTCCGTCCGTCGGCCTAACTTACTCAGTCAGCCATCACCATC AACTTCCGATGACACACCTCCGACCCCCAAAAACCCTTTCAAAACCCTATTGCAATCTTCTCGTGCTTCATCTCCGTCTCCAACCACTGCTTCTCCCGCT TCCAACCCTTTCTGGATGTCCAGCAAGCTCTCTTCTCCTGCTCCTCAGCCGCCTCCTGCCCCGAAAACACGGTCCCGAATTTCAGAAATTGATGTCTCAG AAGCTGAATTCCGGGAACCGGGGAAGATATTCGTTGGGAACCTTCCCAACTGGGTTAAGAAGCACGAATTGGTCGAGTTTTTCAGGCAATTCGGGCCGAT TAAGAGCGTAATCCTTATCAAAAGTCACAATGAGACGGAGAGGAACGCCGGGTTTTGTTTTGTTATCTACGAAGGCTCCACGGCGGAGACTTCCGCCCTG AACGCCGTGGAGTATGACGGGATGGATTTCCACGGCAGGGTTCTGACTGTGAAATTGGACAATGGGAGGAGACTGAAAGCCAAAGCCTTGGAAAGAAAGC GGTGGGTGGGAGGTAAAGGTGGGGAAGAGGAGTACAAGTCCAAGTGGCATGAGGAGAGGGAAGGTTCCAGGATGGCGTTTCGAAGGGTTCTGGATACGCA GCCTGAGAATTGGCAAGCCGTTGTTGATGCATTTGATAAGGTTAATAAGCCTTCTAGAAGAGAGTTTGGATTGATGGTGGGCTATTATGCTAGGCGAGGA GATATGCACCGTGCAAGGCTCACTTTTGAAACCATGCGTGCCAGAGGAATAGAACCCAGCTCTCATCTCTACACTAGCCTTATACATGCTTATGCAGTTG GTAGAGACATGGAAGAAGCACTTTCTTGTGTCAGGAAAATGAAGGAAGAGGGCGTCGAGTTGACTCTGGTTACTTACAGCATTCTTGTCTCCGGATTCGC CAAAATGGGCAATGCAGAAGCTGCCACTTGTTGGTTTGAAGAGGCCAAGGAGAGACATGTGAACTTGAACGCAATCATATATGGAAGCATCATATATGCT CATTGTCAAACACATAACATGGATAAAGCTGAAGCATTAGTGAGGGATATGGAAGAAGAAGGTATAGATGCTACCATTGACATATACCATACCATGATGG ACGGGTATACTATGATTGGCAACGAAGAGAAATGCCTTGTTGTATTTCAAAGACTTAAGGGGGGCAAAGTTTCAAAAGCGATGGAAGTTTGCAAATTGAT GGAACATGATGGCATAAGACATAACATGAAGACTTACTCCATGTTGATCAATGGATTCTTGAAGTTAAAAGATTGGGAAAATGCATTTGCAGTTTTCGAG GATGTTGTTAATGATGGTATGAAACCTGATGTGGTGCTCTATAATAACATCATCAAAGCGTTTTGTTGTATGGGAAACATGGATCGTGCCATTGGGATGG TCAATCAGATGCAGAAGGAAAGGCATAGACCTACCACACGTACATTTATGCCCATCATTCATGCATTTGCAAGAGCTGGAGACATGAGAAGAGCGCTGGA GACATTTGATATGATGAGGCGGAGTGGTTGCTTCCCGTCAGTGCACACTTTTAACGCATTGATTCTCGGTCTCGTTGAGAAGCGTGAGATGGAGAAGGCA GTTGGAATATTGGATGAGATGGCACTAGCAGGTGTTACTCCAAATGAACATACATACACAACAATTATGCATGGTTTTGCTGTGCTAGGTGACACTGGTA AAGCTTTCGAGTACTTCACTAAACTGAGAAACGAAGGACTAGATCTCGATGTGTTCACATACGAGGCATTGTTGAAGGCATGCTGCAAGTCGGGAAGGAT GCAAAGTGCTTTAGCAGTCACTAAAGAAATGAGTGCCCGAAAAATCCTCAGAAACAAATTCGTCTACAACATATTAATTGATGGATGGGCTCGAAAGGGT GATGTATGGGAGGCAGCTGATCTTATGCAACAAATGAAGAAAGAAGGAGTTCAACCTGACATCCACACTTATACTTCCTTTATAAAGGCTTCCTGCAAAG CTGGAGATATGGAAAGAGCAACGAAGACCATGGAGGAAATGGCAGCCAGTGGAGTGAAGCCAAATGTGAAAACATACACTACCTTGATCTATGGCTGGGC TCGAGCATCACTCCCCGAGAAAGCACTGAGATGCTTCGAAGAAATGAAGTCTCGGCGACTAAAGCCAGACAAGGCGGTGTACCATTGCTTGATGACGTCC CTCCTCTCGAGGGCTACCGTGACTGAGGCATACATTTACTCGGGAATCCAGTCAGTCTGCAAAGAGATGGCTGAATGTGAGCTGACGTTTGATATGGGTA CGGCCGTGCATTGGTCGAAACGTTTGCGGAAGATTGAGAGAAGCGGCGGAGAGATCACAGAAGCACTGCAGAAAACCTTCCCTCCTGAATGGAGTGCAAG CCATGTTCCCATCTCGGATTCGGATGATGAACTCAACATTGAGAGTGACGATGACGACGATGATGGTGATAGCTTTTACTCGGCAGATGCAGATGATGGT GACGAGGACGACAATGATGGTGGTAGTCTAAGACGAAGAATGCTCGGCGATAGAAGCTTCCAATTGTAG
AA sequence Show only first row Show all	>Lus10034149 pacid=23154764 polypeptide=Lus10034149 locus=Lus10034149.g ID=Lus10034149.BGIv1.0 annot-version=v1.0 MDILSISAATSLSFPTAAGKRPPYLLPPTSASLSPNPPPTPPPSQSPNPNTSSSVRRPNLLSQPSPSTSDDTPPTPKNPFKTLLQSSRASSPSPTTASPA SNPFWMSSKLSSPAPQPPPAPKTRSRISEIDVSEAEFREPGKIFVGNLPNWVKKHELVEFFRQFGPIKSVILIKSHNETERNAGFCFVIYEGSTAETSAL NAVEYDGMDFHGRVLTVKLDNGRRLKAKALERKRWVGGKGGEEEYKSKWHEEREGSRMAFRRVLDTQPENWQAVVDAFDKVNKPSRREFGLMVGYYARRG DMHRARLTFETMRARGIEPSSHLYTSLIHAYAVGRDMEEALSCVRKMKEEGVELTLVTYSILVSGFAKMGNAEAATCWFEEAKERHVNLNAIIYGSIIYA HCQTHNMDKAEALVRDMEEEGIDATIDIYHTMMDGYTMIGNEEKCLVVFQRLKGGKVSKAMEVCKLMEHDGIRHNMKTYSMLINGFLKLKDWENAFAVFE DVVNDGMKPDVVLYNNIIKAFCCMGNMDRAIGMVNQMQKERHRPTTRTFMPIIHAFARAGDMRRALETFDMMRRSGCFPSVHTFNALILGLVEKREMEKA VGILDEMALAGVTPNEHTYTTIMHGFAVLGDTGKAFEYFTKLRNEGLDLDVFTYEALLKACCKSGRMQSALAVTKEMSARKILRNKFVYNILIDGWARKG DVWEAADLMQQMKKEGVQPDIHTYTSFIKASCKAGDMERATKTMEEMAASGVKPNVKTYTTLIYGWARASLPEKALRCFEEMKSRRLKPDKAVYHCLMTS LLSRATVTEAYIYSGIQSVCKEMAECELTFDMGTAVHWSKRLRKIERSGGEITEALQKTFPPEWSASHVPISDSDDELNIESDDDDDDGDSFYSADADDG DEDDNDGGSLRRRMLGDRSFQL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10034149 [exp]	0	1
					Lus10006129 [exp]	1.7	0.8972
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10008969 [exp]	3.7	0.8957
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Lus10036417 [exp]	11.2	0.8823
AT3G13490		ATKRS-2, OVA5	OVULE ABORTION 5, ARABIDOPSIS ...		Lus10013408 [exp]	12.5	0.8814
AT5G04710			Zn-dependent exopeptidases sup...		Lus10034142 [exp]	13.4	0.8722
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10016125 [exp]	14.3	0.8521
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10043434 [exp]	14.7	0.8787
AT1G53800			unknown protein		Lus10003930 [exp]	21.7	0.8535
AT5G02860			Pentatricopeptide repeat (PPR)...		Lus10002107 [exp]	21.7	0.8527
AT5G02860			Pentatricopeptide repeat (PPR)...		Lus10013894 [exp]	21.8	0.8489

Compare expression of checked genes

Lus10034149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.