Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04820 121 / 6e-33 OFP ATOFP13, OFP13 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) AT2G36050 76 / 4e-16 OFP ATOFP15, OFP15 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15, ovate family protein 15 (.1) AT3G52540 75 / 1e-15 OFP ATOFP18, OFP18 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 18, ovate family protein 18 (.1) AT4G14860 63 / 5e-12 OFP ATOFP11 ovate family protein 11 (.1) AT1G05420 57 / 1e-09 OFP ATOFP12, OFP12 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) AT1G79960 57 / 2e-09 OFP ATOFP14, OFP14 ovate family protein 14 (.1) AT2G32100 55 / 9e-09 OFP ATOFP16, OFP16 RABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16, ovate family protein 16 (.1) AT3G52525 54 / 1e-08 OFP ATOFP6, OFP6 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) AT5G22240 53 / 2e-08 OFP ATOFP10, OFP10 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 10, Ovate family protein (.1) AT5G19650 50 / 3e-07 OFP ATOFP8, OFP8 ovate family protein 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043433 [exp] 308 / 5e-106 AT5G04820 146 / 2e-42 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10021303 [exp] 90 / 9e-21 AT5G04820 103 / 8e-26 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10016979 [exp] 83 / 1e-18 AT5G04820 105 / 3e-27 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10043406 [exp] 79 / 1e-17 AT5G04820 64 / 1e-12 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10006912 [exp] 62 / 2e-11 AT1G05420 112 / 2e-30 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10035891 [exp] 63 / 3e-11 AT1G79960 166 / 2e-48 ovate family protein 14 (.1) Lus10014677 [exp] 60 / 2e-10 AT1G05420 109 / 2e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10010554 [exp] 60 / 2e-10 AT1G05420 104 / 2e-27 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10006120 [exp] 59 / 9e-10 AT1G05420 103 / 6e-26 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G017500 [exp] 149 / 2e-44 AT5G04820 163 / 5e-50 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.010G241500 [exp] 147 / 9e-44 AT5G04820 164 / 3e-50 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.006G205500 [exp] 114 / 4e-30 AT5G04820 159 / 1e-47 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.016G072900 [exp] 109 / 1e-28 AT5G04820 153 / 2e-45 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.009G161600 [exp] 86 / 7e-20 AT5G04820 110 / 2e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.005G211300 [exp] 79 / 3e-17 AT4G14860 92 / 5e-23 ovate family protein 11 (.1) Potri.002G051200 [exp] 77 / 2e-16 AT4G14860 62 / 1e-11 ovate family protein 11 (.1) Potri.001G180400 [exp] 69 / 3e-13 AT1G79960 137 / 2e-38 ovate family protein 14 (.1) Potri.010G087200 [exp] 68 / 3e-13 AT4G14860 101 / 3e-26 ovate family protein 11 (.1) Potri.008G153500 [exp] 67 / 4e-13 AT4G14860 103 / 1e-27 ovate family protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04844 [flax] [poplar] Ovate Transcriptional repressor, ovate
Representative CDS sequence Show only first row Show all	>Lus10034150 pacid=23154713 polypeptide=Lus10034150 locus=Lus10034150.g ID=Lus10034150.BGIv1.0 annot-version=v1.0 ATGAAGATCCCTTCATTCCTCAAGTCCACCACCGTTCCTCCTCCTCCTACAGAAACCTCAGTCAACGCCGTCGTCGGACGTCAATGGAGGAAATGGCCGT CTTGCAGCTACCCTGACACCCTCTCTTTCAGATCCCCTTCTTCTTCTTCTTCCTTTGACGGTATCTTCAAAACCCTCAACGGTATCTACTTCCATGACGT CGACCAAGGATTACTAGCTACAGCAGAAGAAGAAGCACAGGACATCCCGGGTTTCGCGGCGAATGATGAAATCTTACTCTCCACGTACGATTCCGATTCC GAAGGTGATTCTGAGATGTTGGTCCGCGGAATCAGATCGTCCGACCGATTGTTCTTCGACCCGGACCAAATCAGCTCGGCGATTTTGCTGCGGGAAACAG AGGAGGAGGCGCCGGAGGCAGAGGAAGAGGAGAAGGCGCCGCCGACGAAAGGGGTTCCGTTCGAAGATAGCGTGATGCTGGCGATGGAGTCGGAGGATCC GTACCTGGACTTCAGGAGATCTATGGAAGAGATGGTTGAGTTCCAAGGGATTGATTGTTGTAAAGATTGGGACCGACTGGAGGAGCTCCTGCAGTGGTAT TTGAATGTCAACGGCAAGAAGAATCATGGGTTTATCGTCGGTGCGTTTTTGGATGTGTTAGTCGGAATCTCCGGCGGTGCTCCGACGACTGGGTGTGATT CGTTTTCGTCTGCGGTTACTTGTCTATCTCCTTCTCGTGATTCTTGTTCCACTACTACCAATTCTGATTCTTCTTCTCCCATATTTTACCCAAGAGGGTG A
AA sequence Show only first row Show all	>Lus10034150 pacid=23154713 polypeptide=Lus10034150 locus=Lus10034150.g ID=Lus10034150.BGIv1.0 annot-version=v1.0 MKIPSFLKSTTVPPPPTETSVNAVVGRQWRKWPSCSYPDTLSFRSPSSSSSFDGIFKTLNGIYFHDVDQGLLATAEEEAQDIPGFAANDEILLSTYDSDS EGDSEMLVRGIRSSDRLFFDPDQISSAILLRETEEEAPEAEEEEKAPPTKGVPFEDSVMLAMESEDPYLDFRRSMEEMVEFQGIDCCKDWDRLEELLQWY LNVNGKKNHGFIVGAFLDVLVGISGGAPTTGCDSFSSAVTCLSPSRDSCSTTTNSDSSSPIFYPRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Lus10034150 [exp]	0	1
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10008603 [exp]	16.6	0.8251
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10024854 [exp]	17.2	0.8281
AT4G34810			SAUR-like auxin-responsive pro...		Lus10042378 [exp]	19.4	0.8172
AT3G14000		ATBRXL2, BRX-LI...	DZC (Disease resistance/zinc f...		Lus10008459 [exp]	19.4	0.7827
AT2G20520		FLA6	FASCICLIN-like arabinogalactan...		Lus10033651 [exp]	24.5	0.8142
AT5G47900			Protein of unknown function (D...		Lus10039223 [exp]	24.8	0.7977
AT5G38650			Proteasome maturation factor U...		Lus10005377 [exp]	31.7	0.7891
AT5G11420			Protein of unknown function, D...		Lus10035910 [exp]	34.3	0.7984
AT1G04040			HAD superfamily, subfamily III...		Lus10011774 [exp]	38.1	0.7971
AT2G17080			Arabidopsis protein of unknown...		Lus10014446 [exp]	38.2	0.7871

Compare expression of checked genes

Lus10034150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.