Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52340 907 / 0 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1) AT5G03540 825 / 0 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT5G52350 548 / 0 ATEXO70A3 exocyst subunit exo70 family protein A3 (.1) AT1G72470 325 / 8e-102 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT3G14090 315 / 3e-98 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT5G58430 304 / 5e-94 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1) AT1G54090 299 / 3e-92 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT5G50380 277 / 2e-83 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT5G13150 263 / 2e-78 ATEXO70C1 exocyst subunit exo70 family protein C1 (.1) AT5G13990 263 / 8e-78 ATEXO70C2 exocyst subunit exo70 family protein C2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043432 [exp] 1254 / 0 AT5G03540 1004 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10021283 [exp] 872 / 0 AT5G52340 995 / 0.0 exocyst subunit exo70 family protein A2 (.1) Lus10008126 [exp] 343 / 2e-108 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10013163 [exp] 322 / 4e-103 AT1G72470 740 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10016764 [exp] 322 / 2e-100 AT5G50380 807 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10022459 [exp] 308 / 6e-96 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10022795 [exp] 253 / 6e-74 AT5G58430 796 / 0.0 exocyst subunit exo70 family protein B1 (.1) Lus10015757 [exp] 250 / 2e-73 AT5G13150 585 / 0.0 exocyst subunit exo70 family protein C1 (.1) Lus10041536 [exp] 247 / 2e-71 AT5G13990 608 / 0.0 exocyst subunit exo70 family protein C2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G017800 [exp] 1059 / 0 AT5G03540 960 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.010G241800 [exp] 1050 / 0 AT5G03540 988 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.006G203900 [exp] 938 / 0 AT5G52340 988 / 0.0 exocyst subunit exo70 family protein A2 (.1) Potri.016G071000 [exp] 933 / 0 AT5G52340 1021 / 0.0 exocyst subunit exo70 family protein A2 (.1) Potri.001G166400 [exp] 347 / 2e-110 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.003G068700 [exp] 341 / 4e-108 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.015G094800 [exp] 328 / 4e-103 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.012G097100 [exp] 323 / 9e-101 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.001G060700 [exp] 279 / 3e-84 AT5G13150 658 / 0.0 exocyst subunit exo70 family protein C1 (.1) Potri.019G124000 [exp] 275 / 4e-83 AT5G58430 726 / 0.0 exocyst subunit exo70 family protein B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10034151 pacid=23154823 polypeptide=Lus10034151 locus=Lus10034151.g ID=Lus10034151.BGIv1.0 annot-version=v1.0 ATGGCAGTTGCAGCAATGGCTGGGGGCGTCGATTCCCTTAGCGACAGAGCCGCCAAGATGAAGGAAGCTCTCCTCAAGAGCCAGACAATCTCCGAGAACG TCGTCTCTATTCTCGGCTCTTTCGACAGTCGCCTCTCTGTCCTCGAGGCTGCCATGCGTCCCACTCAGATTAGGACACATGCTATTCGGAAGGCTCATGA GAATATAGACAAGACTCTCAAGGCTGCGGAGGTTATATTGGCTGAATTCGACATTTCTCGAGAGGCAGAGGCAAAAATACTTAGGGGACCACATGAGGAC TTAGAAAGTTATTTGGAAGCTATCGAGCAGCTGAGAAAGCATATACGTTTCTTCAGCAGTAACAAAGGTTTTAAGACTGGCGATGCAGTGCTCAATAATG CAAATAGCTTACTTGCTAAAGCCATATCAAAGCTAGAAGATGAATTTAAGCAGCTACTAGCGTCTTACAGCAAACCTGTGGAGCCTGACCGTCTTTTTGA ATGCCTTCCCGAATCAATGCGACCTTCTGCTGGATCCCCTGCAAACCATGGTGATCCTAATGGCTTAGTTCCTTCTTCCCATGGTCATTCTGAGCATAGT AATGCAGAGGCTGCTAGCTTTAAACCCCTTGTTCTGATACCGCCGAGAACTGTACCTTTACTGCATGATCTTTCCATACATATGGTCCAAGCTGGGCACC AACAGCAATTGCTAAAGATTTACAGGGATACACGATCATCAGTTCTGGAAGAAAGCCTTCGCAAATTGGGAGTTGAAAGACTGAGTAAAGAAGATATTCA AAAGATGCAATGGGAGGTCTTGGAAGCAAAGATTGGAAATTGGATTCACTTCATGCGAATTGCTGTCAAGGTCTTGTTTGCTGGAGAAAGAAGACTTTGT GATCAAATCTTTGATGGATTTGAATCTCTCCGAGATCAATGTTTTGCTGAATGCACAGGCAATAATGTCTCAATGCTTCTCAGTTTTGGAGAAGCCATAA CGAAAAGCAAGAGATCACCAGAAAAATTGTTTGTTCTTCTTGACATGTATGAGATAATGCGAGAACTTCATTCAGAGATTGAAACAGTTTTCAGTGGAAA AGTTTGTGTGGAAATTAGGGAATCAACAATTGGTTTGAGCAAGAGGCTTGCCCAGACAGCTCAAGAAACTTTTGGTGATTTCGAAGAAGCAGTTGAAAAG GATGCAACTAAAACAGCTGTGCTGGATGGAACTGTTCATCCCCTAACGAGTTACGTGATCAACTATGTGAAGTTTCTATTTGACTACCAATCAACATTGA ACCAACTGTTTCAAGAATTTGAAACTGGAGGGGAGACGACTTCGCAGTTAGCTACTGTGACAATGCGAATAATGCAGGCTCTTCAGACCAATTTGGATGG AAAATCTAAGCAGTATAAAGATCAAGCTTTGACACACTTATTTCTGATGAACAATATTCACTACATGGTCAGATCTGTCCGCAGATCTGAAGCCAAGGAC CTGTTGGGAGATGATTGGGTACAACGACACAGAAGAGTTGTGCAGCTGCATGCAAACCAATACAAACGGATTGCTTTGGGAAAGTTCCTTTGCTCTGCAT TTGGAATGCAATGCTATATTCTCAAAGTTGCTAGTTTTGAAGTATTTGACCCAAATAGAATGTCTCACCTGAGTATCGAACCTTTTCAGCTTCTCCAATG CCTCTCTGCTCAAGGCCTAACTTCATCAGGAGGAAGTTCCACAGGACCCGGCGAGGGAGGAAGTGGCAGCGGAGCTTCAAGGGGATTGGTTAAAGAGAGG TTCAAGATCTTCAATGTTCAATTTGAGGATCTCCACCAGAAACAATCTCAGTGGACAGTACCCGACACCGAGCTGCGAGAATCTCTTAGGCTCGCAGTTG CAGAGCTCTTGTTACCTGCCTACAGATCTTTCGTAAAACGTTTCGGGCCACTAGTTGAGAGCGGGAAGAACCCGCAGAAGTACATTAAGTACTCAGCTGA GGACCTGGAGAGAATGCTGGGCGAATTTTTCGAAGGCAAGACCCTGAACGAGCCGAGACGGTAG
AA sequence Show only first row Show all	>Lus10034151 pacid=23154823 polypeptide=Lus10034151 locus=Lus10034151.g ID=Lus10034151.BGIv1.0 annot-version=v1.0 MAVAAMAGGVDSLSDRAAKMKEALLKSQTISENVVSILGSFDSRLSVLEAAMRPTQIRTHAIRKAHENIDKTLKAAEVILAEFDISREAEAKILRGPHED LESYLEAIEQLRKHIRFFSSNKGFKTGDAVLNNANSLLAKAISKLEDEFKQLLASYSKPVEPDRLFECLPESMRPSAGSPANHGDPNGLVPSSHGHSEHS NAEAASFKPLVLIPPRTVPLLHDLSIHMVQAGHQQQLLKIYRDTRSSVLEESLRKLGVERLSKEDIQKMQWEVLEAKIGNWIHFMRIAVKVLFAGERRLC DQIFDGFESLRDQCFAECTGNNVSMLLSFGEAITKSKRSPEKLFVLLDMYEIMRELHSEIETVFSGKVCVEIRESTIGLSKRLAQTAQETFGDFEEAVEK DATKTAVLDGTVHPLTSYVINYVKFLFDYQSTLNQLFQEFETGGETTSQLATVTMRIMQALQTNLDGKSKQYKDQALTHLFLMNNIHYMVRSVRRSEAKD LLGDDWVQRHRRVVQLHANQYKRIALGKFLCSAFGMQCYILKVASFEVFDPNRMSHLSIEPFQLLQCLSAQGLTSSGGSSTGPGEGGSGSGASRGLVKER FKIFNVQFEDLHQKQSQWTVPDTELRESLRLAVAELLLPAYRSFVKRFGPLVESGKNPQKYIKYSAEDLERMLGEFFEGKTLNEPRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Lus10034151 [exp]	0	1
AT1G06470			Nucleotide/sugar transporter f...		Lus10010954 [exp]	2.0	0.9036
AT2G30910		ARPC1B, ARPC1, ...	actin-related protein C1A (.1....		Lus10031375 [exp]	2.0	0.8752
AT5G46630			Clathrin adaptor complexes med...		Lus10040086 [exp]	2.2	0.8412
AT1G79940		ATERDJ2A	DnaJ / Sec63 Brl domains-conta...		Lus10039293 [exp]	4.5	0.8242
AT1G21660			Chaperone DnaJ-domain superfam...		Lus10018854 [exp]	6.2	0.8154
AT5G47960		SMG1, AtRABA4c	SMALL MOLECULAR WEIGHT G-PROTE...		Lus10014732 [exp]	7.1	0.8099
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10029689 [exp]	7.6	0.7914
AT2G38250	Trihelix		Homeodomain-like superfamily p...		Lus10002481 [exp]	8.5	0.8075
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10034820 [exp]	9.2	0.8355
AT3G26670			Protein of unknown function (D...		Lus10041504 [exp]	9.5	0.8319

Compare expression of checked genes

Lus10034151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.