Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17450 71 / 1e-15 RHA3A RING-H2 finger A3A (.1) AT5G01880 68 / 8e-15 RING/U-box superfamily protein (.1) AT3G10910 68 / 2e-14 RING/U-box superfamily protein (.1) AT1G20823 67 / 7e-14 RING/U-box superfamily protein (.1) AT4G35480 65 / 3e-13 RHA3B RING-H2 finger A3B (.1) AT5G06490 65 / 4e-13 RING/U-box superfamily protein (.1) AT4G09560 66 / 5e-13 NHL22 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT3G48030 66 / 5e-13 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT1G22670 65 / 1e-12 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT2G35910 64 / 1e-12 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043428 [exp] 105 / 2e-26 AT5G03730 710 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10008972 [exp] 86 / 2e-21 AT5G06490 76 / 2e-17 RING/U-box superfamily protein (.1) Lus10043426 [exp] 70 / 7e-15 AT4G40070 84 / 5e-19 RING/U-box superfamily protein (.1) Lus10034157 [exp] 70 / 1e-14 AT4G40070 84 / 7e-19 RING/U-box superfamily protein (.1) Lus10028454 [exp] 66 / 2e-13 AT1G72200 85 / 3e-19 RING/U-box superfamily protein (.1) Lus10041907 [exp] 66 / 5e-13 AT4G36050 410 / 6e-135 endonuclease/exonuclease/phosphatase family protein (.1.2) Lus10009511 [exp] 65 / 1e-12 AT2G20030 228 / 3e-71 RING/U-box superfamily protein (.1) Lus10011702 [exp] 65 / 1e-12 AT4G28890 231 / 1e-71 RING/U-box superfamily protein (.1) Lus10012987 [exp] 65 / 2e-12 AT5G40250 302 / 7e-101 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G243500 [exp] 81 / 1e-19 AT5G06490 113 / 6e-32 RING/U-box superfamily protein (.1) Potri.010G243200 [exp] 79 / 6e-19 AT5G06490 138 / 2e-41 RING/U-box superfamily protein (.1) Potri.010G243300 [exp] 79 / 1e-18 AT2G35910 115 / 2e-32 RING/U-box superfamily protein (.1) Potri.016G067900 [exp] 77 / 4e-18 AT2G35910 129 / 7e-38 RING/U-box superfamily protein (.1) Potri.010G243400 [exp] 77 / 4e-18 AT2G35910 152 / 4e-47 RING/U-box superfamily protein (.1) Potri.006G201500 [exp] 76 / 1e-17 AT2G35910 122 / 4e-35 RING/U-box superfamily protein (.1) Potri.008G019000 [exp] 76 / 2e-17 AT5G06490 131 / 8e-39 RING/U-box superfamily protein (.1) Potri.008G018900 [exp] 73 / 1e-16 AT2G35910 100 / 2e-26 RING/U-box superfamily protein (.1) Potri.002G153400 [exp] 72 / 1e-15 AT2G20030 83 / 8e-19 RING/U-box superfamily protein (.1) Potri.014G076800 [exp] 71 / 1e-15 AT4G10150 84 / 1e-19 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10034153 pacid=23154817 polypeptide=Lus10034153 locus=Lus10034153.g ID=Lus10034153.BGIv1.0 annot-version=v1.0 ATGACCCATACTAAACCTTCTCCAGATCATGTCCCCAAAGCCTTCCCTTTAGCCTTCGGTGTCGCCGTCGGCTCCCTTTCCCTCCTCGCTATCTTCATCT GCCTTTGCTGCCTCTTCGTCCGCCGTCGACGACACCCTCGTCCAGTCGCCAGAACCTACTCCGACGCCGACACCGACAACGATTCCGACGTCGCCATTGA CATGAGCAGTACCGTAAACAATACCGTCGGCGATGAAGACGACCTCAGCCGCTTCCCAAAGCTCATATACAACAGCAACAGTACTAAAATGGAGGGGACC AATTCCACGTCAGCAGTAGCGTCGGTGGGGTCCAGCAGCAGCTGCGCGATCTGCCTGGCCGACTACTCCGACGGTGACGTCCTCCGGTTGCTCCCTGGGT GCGGACATTCATTCCACGTGGCCTGTGTGGATCCCTGGCTTGTGAAGAGGAAATCTATCACTTGCCCCATCTGCCGGCGCCAACATTCGCGGCCGGCTGC CGTGGGTAGTAATAAATAG
AA sequence Show only first row Show all	>Lus10034153 pacid=23154817 polypeptide=Lus10034153 locus=Lus10034153.g ID=Lus10034153.BGIv1.0 annot-version=v1.0 MTHTKPSPDHVPKAFPLAFGVAVGSLSLLAIFICLCCLFVRRRRHPRPVARTYSDADTDNDSDVAIDMSSTVNNTVGDEDDLSRFPKLIYNSNSTKMEGT NSTSAVASVGSSSSCAICLADYSDGDVLRLLPGCGHSFHVACVDPWLVKRKSITCPICRRQHSRPAAVGSNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17450		RHA3A	RING-H2 finger A3A (.1)		Lus10034153 [exp]	0	1
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Lus10031150 [exp]	14.1	0.8362
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10035235 [exp]	21.2	0.8108
AT3G11320			Nucleotide-sugar transporter f...		Lus10028255 [exp]	21.8	0.8060
AT1G80950			Phospholipid/glycerol acyltran...		Lus10032706 [exp]	22.1	0.8275
AT3G55260		HEXO1, ATHEX2	beta-hexosaminidase 1 (.1)		Lus10030323 [exp]	33.4	0.7991
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10042318 [exp]	56.0	0.7941
AT1G77860		KOM	KOMPEITO, Rhomboid-related int...		Lus10003743 [exp]	64.4	0.7876
AT2G24300			Calmodulin-binding protein (.1...		Lus10019056 [exp]	65.4	0.7879
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10041249 [exp]	77.5	0.7851
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10004662 [exp]	87.9	0.7413

Compare expression of checked genes

Lus10034153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.