Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03730 582 / 0 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) AT4G24480 363 / 2e-113 Protein kinase superfamily protein (.1) AT1G73660 338 / 2e-103 protein tyrosine kinase family protein (.1) AT1G18160 336 / 7e-103 Protein kinase superfamily protein (.1) AT5G11850 329 / 5e-101 Protein kinase superfamily protein (.1) AT1G08720 327 / 5e-100 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) AT5G49470 309 / 8e-98 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT3G06620 301 / 2e-91 PAS domain-containing protein tyrosine kinase family protein (.1) AT3G06640 300 / 2e-91 PAS domain-containing protein tyrosine kinase family protein (.1) AT1G67890 295 / 2e-89 PAS domain-containing protein tyrosine kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043428 [exp] 1140 / 0 AT5G03730 710 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10023865 [exp] 599 / 0 AT5G03730 1041 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10014368 [exp] 582 / 0 AT5G03730 1030 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10042868 [exp] 399 / 5e-127 AT4G24480 988 / 0.0 Protein kinase superfamily protein (.1) Lus10028169 [exp] 371 / 3e-120 AT4G24480 823 / 0.0 Protein kinase superfamily protein (.1) Lus10027247 [exp] 335 / 2e-102 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1) Lus10031341 [exp] 327 / 2e-100 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10000937 [exp] 325 / 4e-100 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10004124 [exp] 325 / 1e-99 AT1G08720 948 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G025800 [exp] 644 / 0 AT5G03730 670 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.010G234700 [exp] 627 / 0 AT5G03730 655 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.016G095750 [exp] 621 / 0 AT5G03730 970 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.006G115800 [exp] 592 / 0 AT5G03730 957 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.005G153100 [exp] 473 / 4e-155 AT4G24480 1019 / 0.0 Protein kinase superfamily protein (.1) Potri.002G111200 [exp] 379 / 3e-119 AT4G24480 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.015G040100 [exp] 334 / 1e-101 AT1G73660 593 / 0.0 protein tyrosine kinase family protein (.1) Potri.012G048400 [exp] 333 / 4e-101 AT1G73660 1065 / 0.0 protein tyrosine kinase family protein (.1) Potri.005G047600 [exp] 328 / 5e-100 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.013G034800 [exp] 328 / 5e-100 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10034154 pacid=23154861 polypeptide=Lus10034154 locus=Lus10034154.g ID=Lus10034154.BGIv1.0 annot-version=v1.0 ATGGACTACGGCGGCGAAACGGCTCCTACCACGGCGGCGGCGTCGTCGCTCAGCAAGACCTGGGCTCAACAGACGGAAGAGAGCTACCAGTTGCAGTTGG CACTTGCTCTCCGGATGTCTTCCTTCGCCGCTTTAGCTAGCGATCCCAATTCCTTAACTTCTTCTCCTTCGTCGGATATTGAACTCCACAAACGCCTCCC ACCCATTCCTTCTCCTTCTTCTACGTCTTCTTCTTCTGATTCTGCTCAGCCCCTTTCGCATCGCTTCTGGGTAAATGGCTGTTTGTCTTATTATGATCGA ATACCTGATGGGTTCTATGCAATCTATGGCATGGATGCTTATGTTTGGACGATAAGTACAGACCATAGAGAGCTGGGTTGGATTCCGTCCTTGGATACGT TACAAGCTGTTGATCCTCATGTCGAACCTACTGTGAAAGTTGTCTTGGTTACTGAGCTTGCCAAAGTTGTCTGCAGTCGCATGGGCGGTGAAGCTTTTAG TGAAGATGAGGATTTTTGCAAGTACTGGATGGAGTGCGCTGACGCTTTGAGGAACCGTCTAAGCTCGGTTATACTTCCAATAGGAAGCTTGTCTGTTGGG CTCTGCATCCATCGTGCATTGCTTTTTAAAGTATGCATCCATAGCTTATCTGTTTTCCTGTGTAGAAAGACTATAACAATCAGGGAATACTTGGTTGATT TGTTCAGGAAGCCAGGGAATTTAAGCCATCCTGATTCCTCGCTCAATTGTACATCCTCAATCTCTGCTTCTTCTCCGCTGTCTTACCCGAGGTTCAGTCA TGTTCAAACAGCTCAAGATGTCAAGACGATGGCAAAACTTTATTTCTTTGATGGTCAAGCACTAAAGTTCACCTTTGACAATAATACTAACCCAGGTTCT GTGATAAATGAATGTAGTTTAGGACAAGGTAAAGACAACAAAAACCTTGTACATGCCGCGAGTAATAATCATGAAGCATTTCCGCCCATTGTTCACAGAG ATCCACCTGTCATCAAGTCCTCCTATGTAAAAAACTCAGCAAATTTAGACAAACGGCCCGTTCAATCAAGCCACAAATTAAGGACTGGCCATCAGGATAC AAATCCAATTTCTGTCATCTCCGATAATAGGCCTGACACATCTGATCATATATGGTACGTGGAAAGAAAACCAAAGAATAGTTTGAGCAATGACCTTCAT CTTGAAGATGAAGATTTGAACATTCAATGGAAAGAACTTCATGTGAAGGAGAAGATCGGTGAAGGTTCATTTGGAACTGTCCATCGTGCTGAATGGCGTG GTTCTGAGGTTGCTGTCAAAATTCTGTCGCAACAAGATTTCCATCCACAGCACCTCAAAGAGTTTCTGTCTGAGGTTGCAATCATGAAACGACTGCGGCA TCCAAACATTGTTCTTTTCATGGGTGCTGTTACCCAACCGCCTCACTTATCAATTGTTACCGAATTCTTATCAAGAGGAAGTTTGCATAAACTGCTGCAC AAGCCAGATGCGAGATTAATGCTTGATGAAAGGCGGCGTTTGAGCATGGCTTATGATGTGGCGATAGGTATGAATTATCTTCATCAGCTGAGACCACCCA TTGTCCATCGAGATTTGAAATCTCCAAATCTGTTAGTGGACAGTACATACACTGTTTGCGACTTTGGTTTATCACGTCCTAAAGCGAATACATATCTTTC CTCTAAGACGGCTGCAGGAACACCTGAATGGATGGCACCCGAAGTTCTTCGTAACGAGTCATCAAACGAGAAATCAGATGTTTACAGCTTTGGAGTGATC TTATGGGAACTGGCAACTCTTCAGCAACCTTGGTGGAATCTAAAACAGGCCCAGGTGGTTGAAGCTGTTGGGTTCAAGGGTCAAAAGCTCGAGACTCCAG GCTATGTGAACCCTGCGGTGGCTACCTTAATCGAAGCCTGCTTAACCAATGACCCTTCGGAACGTCCGGCATTCTCCTACATAGTAGAAACTCTAAAGCT GATAAAAAACTCAGTGTCTCGACCGGCTCGGGTGAATTCCGTGTGTAGCTGA
AA sequence Show only first row Show all	>Lus10034154 pacid=23154861 polypeptide=Lus10034154 locus=Lus10034154.g ID=Lus10034154.BGIv1.0 annot-version=v1.0 MDYGGETAPTTAAASSLSKTWAQQTEESYQLQLALALRMSSFAALASDPNSLTSSPSSDIELHKRLPPIPSPSSTSSSSDSAQPLSHRFWVNGCLSYYDR IPDGFYAIYGMDAYVWTISTDHRELGWIPSLDTLQAVDPHVEPTVKVVLVTELAKVVCSRMGGEAFSEDEDFCKYWMECADALRNRLSSVILPIGSLSVG LCIHRALLFKVCIHSLSVFLCRKTITIREYLVDLFRKPGNLSHPDSSLNCTSSISASSPLSYPRFSHVQTAQDVKTMAKLYFFDGQALKFTFDNNTNPGS VINECSLGQGKDNKNLVHAASNNHEAFPPIVHRDPPVIKSSYVKNSANLDKRPVQSSHKLRTGHQDTNPISVISDNRPDTSDHIWYVERKPKNSLSNDLH LEDEDLNIQWKELHVKEKIGEGSFGTVHRAEWRGSEVAVKILSQQDFHPQHLKEFLSEVAIMKRLRHPNIVLFMGAVTQPPHLSIVTEFLSRGSLHKLLH KPDARLMLDERRRLSMAYDVAIGMNYLHQLRPPIVHRDLKSPNLLVDSTYTVCDFGLSRPKANTYLSSKTAAGTPEWMAPEVLRNESSNEKSDVYSFGVI LWELATLQQPWWNLKQAQVVEAVGFKGQKLETPGYVNPAVATLIEACLTNDPSERPAFSYIVETLKLIKNSVSRPARVNSVCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Lus10034154 [exp]	0	1
AT2G34750			RNA polymerase I specific tran...		Lus10005701 [exp]	5.8	0.7941
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10042805 [exp]	19.7	0.7458
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10033102 [exp]	26.7	0.7670
AT5G49570		ATPNG1	peptide-N-glycanase 1 (.1)		Lus10009179 [exp]	31.6	0.7900
AT5G04260		WCRKC2	WCRKC thioredoxin 2 (.1)		Lus10038703 [exp]	42.7	0.7756
AT2G02870			Galactose oxidase/kelch repeat...		Lus10030489 [exp]	54.0	0.7746
AT1G60730			NAD(P)-linked oxidoreductase s...		Lus10037408 [exp]	56.2	0.6942
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10004968 [exp]	58.2	0.7538
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10022009 [exp]	58.6	0.7685
AT3G24740			Protein of unknown function (D...		Lus10022809 [exp]	67.6	0.7380

Compare expression of checked genes

Lus10034154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.