Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G40045 72 / 9e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043427 [exp] 176 / 2e-57 AT4G40045 99 / 4e-27 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G025700 [exp] 87 / 3e-22 AT4G40045 84 / 4e-21 unknown protein Potri.010G234900 [exp] 86 / 5e-22 AT4G40045 / unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034155 pacid=23154678 polypeptide=Lus10034155 locus=Lus10034155.g ID=Lus10034155.BGIv1.0 annot-version=v1.0 ATGATGCGCTACTTCTCCATCTCCCAACCTCCGATCATCTGTTCAATTCCCAACCACTTCTCCTCCTCCTCCTCTTTTGCTCCTCTCCCAACTGCCCTCC CCAAGTCCCACTTCCGACCGCTCCGTATAATCACCTCCGCCTCCAACGGCGGCGACATCAATCAGGCTCGGTCGGACAAAGACCCCAACTTTAACGGAAA TGAGCAAGGAGGAAGCAGCAGCTCCGTTGGAGGTGAAACCCCTTTCCTTCCCAACATCAATTGGGGGAGCCTGTTCCTGAACCCAGATCCCGACAACTTA ATCGCCGTCGGATTGGCCGGATTGCTCACCTGGGCCAGCGTTCAGCTCCTCTGGCAGCTCTTCACAATCTCCCTCGCCATTCTGATTGCTGCTCTCAAAT ACTCCTTCATCGCTGCTCTCCTCATTTTCATCCTCATCACTCTTCTCTAG
AA sequence Show only first row Show all	>Lus10034155 pacid=23154678 polypeptide=Lus10034155 locus=Lus10034155.g ID=Lus10034155.BGIv1.0 annot-version=v1.0 MMRYFSISQPPIICSIPNHFSSSSSFAPLPTALPKSHFRPLRIITSASNGGDINQARSDKDPNFNGNEQGGSSSSVGGETPFLPNINWGSLFLNPDPDNL IAVGLAGLLTWASVQLLWQLFTISLAILIAALKYSFIAALLIFILITLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G40045			unknown protein		Lus10034155 [exp]	0	1
AT1G32360	C3HZnF		Zinc finger (CCCH-type) family...		Lus10004573 [exp]	3.3	0.8265
AT3G02120			hydroxyproline-rich glycoprote...		Lus10015381 [exp]	4.2	0.8110
AT3G18880			Nucleic acid-binding, OB-fold-...		Lus10028815 [exp]	7.5	0.8051
AT2G25720			unknown protein		Lus10032479 [exp]	7.7	0.7839
AT4G22320			unknown protein		Lus10032566 [exp]	8.3	0.8088
AT5G19910		MED31	SOH1 family protein (.1.2)		Lus10021434 [exp]	9.6	0.7427
AT1G65720			unknown protein		Lus10020795 [exp]	10.2	0.7672
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10016451 [exp]	16.0	0.7646
AT5G27690			Heavy metal transport/detoxifi...		Lus10015174 [exp]	16.7	0.7845
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Lus10024901 [exp]	17.5	0.7991

Compare expression of checked genes

Lus10034155 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.