Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04660 676 / 0 CYP77A4 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) AT5G04630 643 / 0 CYP77A9 "cytochrome P450, family 77, subfamily A, polypeptide 9", cytochrome P450, family 77, subfamily A, polypeptide 9 (.1) AT3G10570 639 / 0 CYP77A6 "cytochrome P450, family 77, subfamily A, polypeptide 6", cytochrome P450, family 77, subfamily A, polypeptide 6 (.1) AT3G10560 621 / 0 CYP77A7, UNE9 UNFERTILIZED EMBRYO SAC 9, CYTOCHROME P450, FAMILY 77, SUBFAMILY A, POLYPEPTIDE 7, Cytochrome P450 superfamily protein (.1) AT1G11600 444 / 3e-152 CYP77B1 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) AT1G64930 372 / 8e-124 CYP89A7 "cytochrome P450, family 87, subfamily A, polypeptide 7", cytochrome P450, family 87, subfamily A, polypeptide 7 (.1) AT1G64940 369 / 9e-123 CYP89A6 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) AT2G12190 367 / 5e-122 CYP89A4 Cytochrome P450 superfamily protein (.1) AT1G64950 364 / 9e-121 CYP89A5 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) AT5G61320 320 / 7e-104 CYP89A3 "cytochrome P450, family 89, subfamily A, polypeptide 3", cytochrome P450, family 89, subfamily A, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007658 [exp] 438 / 2e-149 AT1G11600 663 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10018351 [exp] 435 / 1e-147 AT1G11600 662 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10007659 [exp] 421 / 5e-143 AT1G11600 639 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10018350 [exp] 417 / 3e-141 AT1G11600 637 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10007660 [exp] 394 / 3e-132 AT1G11600 706 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10020353 [exp] 347 / 5e-114 AT1G64940 572 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10028654 [exp] 337 / 2e-110 AT1G64940 562 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10010229 [exp] 334 / 7e-109 AT1G64940 574 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10020360 [exp] 326 / 7e-106 AT1G64940 613 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G025500 [exp] 714 / 0 AT5G04660 761 / 0.0 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) Potri.004G018800 [exp] 467 / 5e-161 AT1G11600 701 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Potri.004G019000 [exp] 414 / 2e-140 AT1G11600 645 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Potri.007G088086 [exp] 376 / 2e-125 AT1G64950 636 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.005G079600 [exp] 374 / 1e-124 AT1G64940 575 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.007G087950 [exp] 372 / 6e-124 AT1G64950 642 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G088154 [exp] 372 / 7e-124 AT1G64950 639 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G088018 [exp] 365 / 6e-121 AT1G64940 605 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.013G076600 [exp] 364 / 1e-120 AT1G64940 578 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.013G076700 [exp] 363 / 2e-120 AT1G64940 592 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10034156 pacid=23154755 polypeptide=Lus10034156 locus=Lus10034156.g ID=Lus10034156.BGIv1.0 annot-version=v1.0 ATGCCGTCTCCGCCATACTACTACTATCATATCTTCTTCTTCCCAATTCTCCTCGCCGTCGCCGCCGCCGTCCTCCTCTTTCTCCTCCACTCCTCCAAAT TTTCCAACCGGCGCCGCATCAATCTGCCCCCTGGCCCACCAGGCTGGCCCATCGTCGGAAACCTCCTCCAAGTGGCCCGCTCCGGGAAGCCGTTCTTTAA GTACGTGAACGAAGACCTCAGGCCTAAATACGGACCCATCTTCACCCTCAATATGGGTACCCGCACCTTAATCGTCGTCAGCGACGCTACTTTGGCCCAC GAGGCCCTCATCCAGAAGGGCGCCCTTTTCGCCACCCGACCTGCCGAAAACCCCACCCGATCCGTTTTCAGCTGCAGCAAGTTCACCGTCAACGCCTCCC TCTACGGCCCTGTCTGGCGCTCCCTCCGCCGCAACATGGTCCAGAACATGCTCGGCTCGGCTCGTATCAAGGAGTTCCAGCATCTCCGGCAGTCGGTAAT GGATAACCTAGTGGACCGGATCCGGGTCGAGGCGACGGAAAACAGGGGAGCCGTTTGGGTCCTCCGGAACGTCCGGTTCGCTGTGTTTGAGATTTTACTA GCGATGTGTTTCGGGTTGGAGATGGACGAATCCACCGTGGAGAGGATCGATCGGGTCATGAAATCGGTTTTGTTAGTACTCGACCCGAGAATCGACGATT TCTTGCCCGTTTTGAGCCCTTTTTTCCGGAAACAGAAGAGTCGGGTTGCGGAGGTTAGGAAAGAGCAGGTGGATACCATCGTGCCATTTATCGAACGACG CCGTCAAATGTTGATCAACGGGATGGAAATCGGATCGGACGACAACACCAAAACGCTGTCGTTTTCCTACCTGGACACTCTGTTCGACCTCCGGGTCGAG GGGCGTAACTCCGGGCCTTCCGACCCGGAACTAGTGTCCCTGGTGTCGGAATTCCTCAATGGAGGGACGGACACCACCGCGACGGCGGTGGAATGGGGGA TGGCGCAGCTGATATCGAATTCCCAAGTACAGGACAAGCTTTACAGGGAGGTTACAGCCGTCGTTGGGACCGGGAATAAAGTGGAAGAGAAGGACTTGGA GAGAATGCCGTACTTGCAAGCTGTGGTGAAAGAGCTGCTCCGGAAGCATCCGCCAACGTATTTCGCGCTGACGCATGCGGTGACGGAGGCGACGACGTTG GGAGGGTACGACATTCCGACTGATGCCAGCGTGGAGGTTTACTTACCCGGAATTGGGGAGGACCCGAAGATATGGGTTGAACCGGAGCGGTTCGATCCGG GTAGGTTTGCAACGGGTAAGGAGGAGGCGGATATCACCGGAGTAAGCGGAGTAAAAATGATGCCGTTTGGGGTGGGAAGGAGGATTTGTCCCGGTTTGGG TCTGGGCACGGTTCATCTCCAGCTCATGATTGCTAGGATGGTTCAGGAGTTCGAGTGGAGCGCGTTTCCGGCGGGAGCGCGTGAAGTTGATTTTGCGGAG AAGTTTGAATTTACGGTGGTAATGAAGAATACTTTGAGGGCCGTAATCAAGCCAAGGGTTTAA
AA sequence Show only first row Show all	>Lus10034156 pacid=23154755 polypeptide=Lus10034156 locus=Lus10034156.g ID=Lus10034156.BGIv1.0 annot-version=v1.0 MPSPPYYYYHIFFFPILLAVAAAVLLFLLHSSKFSNRRRINLPPGPPGWPIVGNLLQVARSGKPFFKYVNEDLRPKYGPIFTLNMGTRTLIVVSDATLAH EALIQKGALFATRPAENPTRSVFSCSKFTVNASLYGPVWRSLRRNMVQNMLGSARIKEFQHLRQSVMDNLVDRIRVEATENRGAVWVLRNVRFAVFEILL AMCFGLEMDESTVERIDRVMKSVLLVLDPRIDDFLPVLSPFFRKQKSRVAEVRKEQVDTIVPFIERRRQMLINGMEIGSDDNTKTLSFSYLDTLFDLRVE GRNSGPSDPELVSLVSEFLNGGTDTTATAVEWGMAQLISNSQVQDKLYREVTAVVGTGNKVEEKDLERMPYLQAVVKELLRKHPPTYFALTHAVTEATTL GGYDIPTDASVEVYLPGIGEDPKIWVEPERFDPGRFATGKEEADITGVSGVKMMPFGVGRRICPGLGLGTVHLQLMIARMVQEFEWSAFPAGAREVDFAE KFEFTVVMKNTLRAVIKPRV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04660		CYP77A4	"cytochrome P450, family 77, s...		Lus10034156 [exp]	0	1
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10021394 [exp]	13.5	0.9232
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10043308 [exp]	23.4	0.9145
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Lus10010885 [exp]	35.7	0.9107
					Lus10041161 [exp]	39.6	0.9097
AT5G09360		LAC14	laccase 14 (.1)		Lus10041067 [exp]	47.7	0.9023
AT2G47485			unknown protein		Lus10028487 [exp]	48.1	0.8562
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10043219 [exp]	48.7	0.9020
AT3G09520		ATEXO70H4	exocyst subunit exo70 family p...		Lus10025291 [exp]	49.6	0.8984
AT3G26600		ARO4	armadillo repeat only 4 (.1)		Lus10004620 [exp]	51.7	0.8693
AT2G35658			unknown protein		Lus10011000 [exp]	53.1	0.8365

Compare expression of checked genes

Lus10034156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.