Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G40070 84 / 8e-19 RING/U-box superfamily protein (.1) AT1G20823 80 / 2e-18 RING/U-box superfamily protein (.1) AT2G34990 81 / 4e-18 RING/U-box superfamily protein (.1) AT3G14320 79 / 5e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G76410 78 / 8e-18 ATL8 RING/U-box superfamily protein (.1) AT1G49220 79 / 1e-17 RING/U-box superfamily protein (.1) AT2G27940 79 / 2e-17 RING/U-box superfamily protein (.1) AT1G33480 78 / 3e-17 RING/U-box superfamily protein (.1) AT4G10150 77 / 4e-17 RING/U-box superfamily protein (.1) AT4G10160 77 / 4e-17 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043426 [exp] 462 / 5e-168 AT4G40070 84 / 5e-19 RING/U-box superfamily protein (.1) Lus10015167 [exp] 87 / 5e-20 AT3G05200 226 / 2e-71 RING/U-box superfamily protein (.1) Lus10031515 [exp] 84 / 5e-19 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10000333 [exp] 82 / 4e-18 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1) Lus10006785 [exp] 80 / 4e-18 AT1G49230 197 / 7e-64 RING/U-box superfamily protein (.1) Lus10004460 [exp] 82 / 8e-18 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1) Lus10014526 [exp] 81 / 1e-17 AT5G40250 423 / 6e-148 RING/U-box superfamily protein (.1) Lus10020859 [exp] 79 / 3e-17 AT1G49230 230 / 3e-76 RING/U-box superfamily protein (.1) Lus10033515 [exp] 78 / 3e-17 AT1G49230 224 / 6e-74 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G235200 [exp] 299 / 1e-103 AT1G20823 80 / 3e-18 RING/U-box superfamily protein (.1) Potri.008G025300 [exp] 287 / 4e-99 AT4G40070 86 / 7e-20 RING/U-box superfamily protein (.1) Potri.014G076800 [exp] 151 / 7e-46 AT4G10150 84 / 1e-19 RING/U-box superfamily protein (.1) Potri.002G153400 [exp] 144 / 4e-43 AT2G20030 83 / 8e-19 RING/U-box superfamily protein (.1) Potri.011G063100 [exp] 81 / 2e-18 AT2G42350 106 / 3e-28 RING/U-box superfamily protein (.1) Potri.002G039700 [exp] 82 / 3e-18 AT5G43420 246 / 4e-79 RING/U-box superfamily protein (.1) Potri.010G243300 [exp] 79 / 3e-18 AT2G35910 115 / 2e-32 RING/U-box superfamily protein (.1) Potri.008G018900 [exp] 78 / 5e-18 AT2G35910 100 / 2e-26 RING/U-box superfamily protein (.1) Potri.001G309600 [exp] 79 / 8e-18 AT1G49230 261 / 6e-89 RING/U-box superfamily protein (.1) Potri.016G067900 [exp] 78 / 8e-18 AT2G35910 129 / 7e-38 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10034157 pacid=23154892 polypeptide=Lus10034157 locus=Lus10034157.g ID=Lus10034157.BGIv1.0 annot-version=v1.0 ATGATCACCACAGGGATAAATTTGGTGATGACATTGATAGGATTCGCTGTGAGCACTATGTTCATAGTTTTTGTTTGCACTCGCCTTGTCTGCGCTCGGA TTCACTTGAATGCAGCTCGCCGCTCTTTCCCCGTTGCTTCCAGATCCGATCTTGGCATTATGGAGAGAGGCTACCATGGCCTTGATTCAATAGTTGTGGC TAACTTCCCCACCAAAGAGTACAACAACCAACTCTTCTCAGCCACCGAAGATGCACAATGCACGGTATGTCTAGCTGAATACCACCAAGGAGACATGTTG CGTATCCTTCCATACTGTGGACACTCCTTCCACGTGACCTGCATCGACCTGTGGTTGCAGCAACACTCTACTTGCCCTATCTGCCGAATATCGCTGCACG AGTTCCCAGATAGAAAACGAGCAATGCAGCCGGTGTTCAGCTCAGCCATCCGCTCACAGGAAGGTGTTGCGGAGCTCGATGTCCATTCTTACAACTGTTT ATATGCTGGACATGTGTTTCCACCTAGACGCAGCAATGTTGCAGAACCCAACAACAACGATGGGAGCCACCGGGTATCTGACTGCAGCGAAGAACCGAAA TCACCGTTAGTGCTGGAGGGAAACTGCAGATCCAAAGAGGTAGGAGGAAACAAGCAGATGGAGAGTCCATCAAATCCTTAG
AA sequence Show only first row Show all	>Lus10034157 pacid=23154892 polypeptide=Lus10034157 locus=Lus10034157.g ID=Lus10034157.BGIv1.0 annot-version=v1.0 MITTGINLVMTLIGFAVSTMFIVFVCTRLVCARIHLNAARRSFPVASRSDLGIMERGYHGLDSIVVANFPTKEYNNQLFSATEDAQCTVCLAEYHQGDML RILPYCGHSFHVTCIDLWLQQHSTCPICRISLHEFPDRKRAMQPVFSSAIRSQEGVAELDVHSYNCLYAGHVFPPRRSNVAEPNNNDGSHRVSDCSEEPK SPLVLEGNCRSKEVGGNKQMESPSNP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G40070			RING/U-box superfamily protein...		Lus10034157 [exp]	0	1
AT4G40070			RING/U-box superfamily protein...		Lus10043426 [exp]	1.0	0.9653
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10033720 [exp]	4.9	0.9100
AT3G09050			unknown protein		Lus10035515 [exp]	4.9	0.9311
AT1G65230			Uncharacterized conserved prot...		Lus10027002 [exp]	5.5	0.9178
AT2G47400		CP12-1	CP12 domain-containing protein...		Lus10002428 [exp]	5.7	0.9072
AT1G10350			DNAJ heat shock family protein...		Lus10030803 [exp]	7.2	0.8761
AT1G31170		ATSRX	sulfiredoxin (.1.2.3.4)		Lus10036218 [exp]	10.4	0.8845
AT5G42760			Leucine carboxyl methyltransfe...		Lus10032713 [exp]	12.4	0.9088
AT1G65230			Uncharacterized conserved prot...		Lus10020202 [exp]	13.2	0.9113
AT4G02405			S-adenosyl-L-methionine-depend...		Lus10015003 [exp]	13.3	0.8979

Compare expression of checked genes

Lus10034157 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.