Plant FIBer expression Database

Lus10034158 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G52240 92 / 4e-19 unknown protein
AT2G37300 42 / 0.0006 ABCI16 ATP-binding cassette I16, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043425
[exp]
1113 / 0 AT3G52240 167 / 9e-44 unknown protein
Lus10009075
[exp]
42 / 0.0003 AT2G37300 68 / 9e-15 ATP-binding cassette I16, unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G025000
[exp]
161 / 6e-42 AT3G52240 198 / 2e-54 unknown protein
Potri.016G082700
[exp]
53 / 3e-07 AT2G37300 71 / 1e-14 ATP-binding cassette I16, unknown protein
Potri.006G216300
[exp]
47 / 2e-05 AT2G37300 56 / 2e-09 ATP-binding cassette I16, unknown protein
PFAM info
Representative CDS sequence
>Lus10034158 pacid=23154667 polypeptide=Lus10034158 locus=Lus10034158.g ID=Lus10034158.BGIv1.0 annot-version=v1.0
ATGGAGGATTCTTTTGTGACTATAGAGTTCCTTAGAGCACGCTTGCTGTCTGAAAGATCTGTTTCCAAAACAGCTAGACAGAGAGCTGATGAACTAGCAA
AGAGGGTAGAAGAACTGGAAGAAAAATTGAGAATTGTCTCAGTTCAACGAATGAAGGCTGAAAAGGCAACGGCAAACGTTCTTACAATTCTGGAGAGCAA
TGGTTTGAGTGATGCCTCCGAGGCATTTGATTCAAGCTCTGACCAGGATGCTGAAAGTGAATTTGGCTTGGCGAATGGATGTCCCAAAGAAGTGGAAAGT
TCTGTTAATTCAAAATCTAGAAAAGGAAAGTCGGAAGAACATTCAGGTTCCGACCTTGATTTTTCCCCTTCTCCAGGCCGAAGCTTGTCCTGGAAGAGTA
GCAAAGATGGCACAAGATCTATCAAAAGATGCAAAGATCCAGCTCCAAGAAGAAGTAGTACATCGTCTAGTTCTTCAACAAAAAACCTTGCAGGAAAATC
ATGCCGTCAGATAAGACGTAGAGAAGCCAGAGAACGAGACATGGAAAAGGCCCTTGAACAGCAAGCAGAACTCATAGAAAGATATGATGAGATGGAAAAG
GCTCAAAGAGAATGGGAAGAGAAGTTCAGAGAAAATGCCAGCAGTACACCGGATTCTTGTGATCCTGGGAACAGCTCTGACGTTACTGAGGAAGCTCCAT
ATGAGACCAAGGAACAGTCATCCCATACTGTCGGGTCTGAAGTTGAAGAATTACCGAAAGTCAAATCCAACGGTAATCGTCATCTTGCTGTTATTGTGAA
GCAGGGAATTAGCACACCACCTGTTTCTGGGTCCCCCGGGCACAGTTTTCCCTCCGATCAGCAGGTGCAGCCACATAGTTCAAATTGTTCTCCTGAGTGC
CAATCGACTCCTAATTTGCTATCCGGAACAGCCGGTGATGTCAACAAAGAGAAACCTTCAGGAAGCCAAAGTGAAGTCTACGCATTGGTTCCGCACCAAG
CACCAAAGGAATTGGGAATTCTTGAGGCTCTTAAGCTAGCAAAGGAAACACTCCAACAGCAGATCAACAGCAAAATTCCATCTGTTGCCAGCAGCCCGGT
TGGAACTTCTTATGATCCTTCTTTCCGGATAGCCGGTCCTGGAGATAAGCCAGACATACCAGTTGAATGTCCAGGACTATTCAGACCACCAACTGATTTG
CCAGCTCGAGTTAACAGTGAAGCAAAGTTTCAACAGCAGATGAACAGCAAGATTCCATCTCTTCTGCCAATAGCATCTGGCGATAAACCAGAATTATCAG
TAGGATGTCCAGGACTTTTCAGACTGCCAACTGATCTCCCATCCCGAGTTAACGGTGAAGCAAACTTTCATCCTCTAAGCGAGAGAACTAGTTTGGGAAA
TGAACTCTTGGGTAATAGTAGGAGCAATGGCATCAGTTTTAGTGATGCAAGAACAAGTTTGGGGAACCATCATCATCCTAGCCAGACACATCCAGCAGCA
TCTGGAAGCAATCAACTTGTTGCCATGAGGCAGTACTCAGATCCCGTGACAAGCTTCTCGATAGACAACAACCAATTGCTTCCAGGGAAACAAAATCCTG
AGGGTGGTTCTAGATGGCCTACTCGCGGGCATTACATTGATCCTTCATTAGACGTAGGTTTATCTTCGAATGGATCCCCATATCCCACATTTCCAGCCAG
TCCTGCTTATGGGGATCTGATGTTCCGGATGCCTTCTTCTTCAGAAGGCTTCTCAACGTTTCCTCCCGGTAGAATAACAGATCGAATTCTCACATCTCCG
GCCAGTCCTGCGTATGGTGATGTTATGTTGAGTCAGACGTCTCCTTCAGAAGGATTCTCGGCATTTTCTTCAGGTGGAATAACAGACGGGATTCCTCCCG
CAGACCGTTTCTCATTCTCCAGTCCCTATAGATCAGACATGTATAGATAG
AA sequence
>Lus10034158 pacid=23154667 polypeptide=Lus10034158 locus=Lus10034158.g ID=Lus10034158.BGIv1.0 annot-version=v1.0
MEDSFVTIEFLRARLLSERSVSKTARQRADELAKRVEELEEKLRIVSVQRMKAEKATANVLTILESNGLSDASEAFDSSSDQDAESEFGLANGCPKEVES
SVNSKSRKGKSEEHSGSDLDFSPSPGRSLSWKSSKDGTRSIKRCKDPAPRRSSTSSSSSTKNLAGKSCRQIRRREARERDMEKALEQQAELIERYDEMEK
AQREWEEKFRENASSTPDSCDPGNSSDVTEEAPYETKEQSSHTVGSEVEELPKVKSNGNRHLAVIVKQGISTPPVSGSPGHSFPSDQQVQPHSSNCSPEC
QSTPNLLSGTAGDVNKEKPSGSQSEVYALVPHQAPKELGILEALKLAKETLQQQINSKIPSVASSPVGTSYDPSFRIAGPGDKPDIPVECPGLFRPPTDL
PARVNSEAKFQQQMNSKIPSLLPIASGDKPELSVGCPGLFRLPTDLPSRVNGEANFHPLSERTSLGNELLGNSRSNGISFSDARTSLGNHHHPSQTHPAA
SGSNQLVAMRQYSDPVTSFSIDNNQLLPGKQNPEGGSRWPTRGHYIDPSLDVGLSSNGSPYPTFPASPAYGDLMFRMPSSSEGFSTFPPGRITDRILTSP
ASPAYGDVMLSQTSPSEGFSAFSSGGITDGIPPADRFSFSSPYRSDMYR

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G52240 unknown protein Lus10034158
[exp]
0 1
AT5G66200 ARO2 armadillo repeat only 2 (.1) Lus10041905
[exp]
1.4 0.8737
AT4G02380 SAG21, ATLEA5 Arabidopsis thaliana late embr... Lus10042672
[exp]
3.2 0.8666
AT2G45080 CYCP3;1 cyclin p3;1 (.1) Lus10028174
[exp]
11.5 0.8238
Lus10025700
[exp]
11.7 0.7969
AT1G53035 unknown protein Lus10039835
[exp]
14.8 0.7410
AT5G48545 HINT3 histidine triad nucleotide-bin... Lus10038220
[exp]
15.5 0.8026
AT1G49850 RING/U-box superfamily protein... Lus10002113
[exp]
16.6 0.7952
Lus10035963
[exp]
20.1 0.7755
AT4G37260 MYB ATMYB73 myb domain protein 73 (.1) Lus10010238
[exp]
23.2 0.8045
AT1G10350 DNAJ heat shock family protein... Lus10013280
[exp]
24.4 0.8041

Lus10034158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.