Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36360 659 / 0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT1G74150 117 / 9e-28 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G18610 103 / 4e-23 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G05420 96 / 2e-20 ACBP4 acyl-CoA binding protein 4 (.1.2) AT5G18590 91 / 5e-19 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT4G04670 88 / 6e-18 Met-10+ like family protein / kelch repeat-containing protein (.1) AT5G27630 85 / 4e-17 ACBP5 acyl-CoA binding protein 5 (.1) AT1G68050 82 / 3e-16 ADO3, FKF1 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) AT5G57360 75 / 5e-14 LKP1, FKL2, ADO1, ZTL ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT2G27210 72 / 7e-13 BSL3 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043424 [exp] 892 / 0 AT2G36360 625 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) Lus10031420 [exp] 122 / 3e-29 AT1G74150 179 / 3e-49 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10010913 [exp] 117 / 1e-27 AT1G18610 177 / 1e-48 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017860 [exp] 102 / 6e-23 AT1G18610 478 / 1e-164 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10015176 [exp] 92 / 2e-19 AT3G05420 1024 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10031497 [exp] 92 / 3e-19 AT3G05420 1027 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10002756 [exp] 88 / 6e-18 AT4G04670 1205 / 0.0 Met-10+ like family protein / kelch repeat-containing protein (.1) Lus10043420 [exp] 87 / 1e-17 AT5G18590 611 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10029002 [exp] 81 / 7e-16 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G024700 [exp] 707 / 0 AT2G36360 639 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) Potri.013G008200 [exp] 141 / 2e-35 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G013000 [exp] 135 / 9e-34 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.015G059400 [exp] 105 / 1e-23 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 104 / 1e-23 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G022000 [exp] 86 / 2e-17 AT5G18590 811 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G026900 [exp] 84 / 8e-17 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.013G018800 [exp] 83 / 2e-16 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.008G135200 [exp] 82 / 2e-16 AT1G68050 968 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.008G006300 [exp] 79 / 2e-15 AT1G51550 496 / 1e-173 Kelch repeat-containing F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF07646 [flax] [poplar] Kelch_2 Kelch motif CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10034159 pacid=23154636 polypeptide=Lus10034159 locus=Lus10034159.g ID=Lus10034159.BGIv1.0 annot-version=v1.0 ATGCATTACTGGGCTCGTGCTTCTTCTGCCGATTTCGCCGGCCCTCTTCCACAGCCTCGCAGGTCAGATTTCTTCCGGCTGCTTTCCTTTTCCTTCATTC CGTTACATATTGCTGCAAAGTTTCGAACTTTTCCCTCTTTTCTGGCTGATTCCCGCAGTGGGCATACGGCTGTTGTCGCTGGCAAATCTAAGGTCGTCAT CTTCGGCGGTCTTGTCGACAAGAGATTCCTTAGCGATATCTACGTCTATGATATTGAAAACAAAATGTGGTTTCAGCCCGACTGCACTGGGAACGGGTCT GATGGGCAAGTTGGTCCCTGCCCCCGGGCATTTCATGTAGCTGTGGTCATTGATACTATGATGTTCATATTCGGTGGAAGGTCTGGTGGCAAAAGGCTGG GTGATTTTTGGCTTCTTGATACAGATACATGGCAGTGGTCTGAGCTGACAAGTTTTGGTGACTTGCCTTCACCTAGGGATTTCGCAGCAGCTTCAGCTGT TGGAAACCAGAAAATTGTTATGTTTGGTGGCTGGGATGGGAAAAAGTGGTTATCGGATGTCTATGTCCTAGACACGATATCACTTGAATGGACAGAGCTG GCAATCACTGGAGCCATCCCTCCTCCCCGATGTGGCCATACAGTTACCATGGTTGAGAAGCGGTTGCTTGTTTATGGTGGCAGAGGTGGTGGTGGTCCAA TCATGAGCGATTTATGGGCTCTAAAGGGTCTGATTGATGAAGGTTGGTGTTTCATCCTTTATCTGAATTCTGTTTTCGGTTGCGCTCAGATTCATCAAGA GAATGAAACACCTGGGTGGACCCAGTTGAAGCTCCCTGGTCAAGCTCCTTCTGCTCGCTGTGGACATACGATTACATCTGGCGGGGTCAATTTGTTGCTT TTTGGAGGACACGGGACTGGTGGCTGGTTGAGTCGTTATGACATCTATTATAATGATTGCATTATCTTGGACAGAGTTTCTGCTCAATGGAAGCGCTTGC CTATTGGCAATGACCCCCCTCCTGCCCGAGCTTACCACACCATGACGTGTGTTGGGCCACGTTATTTGTTATTTGGGGGTTTTGATGGGAAGTTGACTTT TGGTGATATATGGTGGTTGGTCCCAGAAGGGGATTCAATAACCAAGAGACTTGTTGCATCTCCAAGGAAAAATGTGCAGGGAAATATTGGTGCCAGTATG GATAACCAATCAATGCTTAAGGAAAATCAAAGGGTTGGATCTGCTGTATCAGACTTGCAGAAGAGGCTGCAAGTAACAGTTATGCTTCCTGCATCGGGTC TTCAAATTGTAGACGAGCAGGAAGATAAAGAGCTTCTTGAACTTGCTTCGAGTTTACTTGGCGATAGAGTTTCTAGTATCGAGCAGGAAGTTAAGTTTAT TCGCGATCGCTGGAAGACATCTTCTCCTAGATCAATTGCCCTGAAGGAGATTGGACCATTGCTTCGTGACTACCAACGTCTTATTGCTCGTCGCTTTAGT AGTGAAGCTGACTTGCAGAAGATGGAGTCTGATCTTCGTGGGAAAGAGACTTATCGGTTCTATCACTTTCTAAATGCTTCACAGTTGCGAATGGATGATA TCTCTAAGCTGCTGGAAGAATACAAACAGCTTTTGTTATCAGAATGA
AA sequence Show only first row Show all	>Lus10034159 pacid=23154636 polypeptide=Lus10034159 locus=Lus10034159.g ID=Lus10034159.BGIv1.0 annot-version=v1.0 MHYWARASSADFAGPLPQPRRSDFFRLLSFSFIPLHIAAKFRTFPSFLADSRSGHTAVVAGKSKVVIFGGLVDKRFLSDIYVYDIENKMWFQPDCTGNGS DGQVGPCPRAFHVAVVIDTMMFIFGGRSGGKRLGDFWLLDTDTWQWSELTSFGDLPSPRDFAAASAVGNQKIVMFGGWDGKKWLSDVYVLDTISLEWTEL AITGAIPPPRCGHTVTMVEKRLLVYGGRGGGGPIMSDLWALKGLIDEGWCFILYLNSVFGCAQIHQENETPGWTQLKLPGQAPSARCGHTITSGGVNLLL FGGHGTGGWLSRYDIYYNDCIILDRVSAQWKRLPIGNDPPPARAYHTMTCVGPRYLLFGGFDGKLTFGDIWWLVPEGDSITKRLVASPRKNVQGNIGASM DNQSMLKENQRVGSAVSDLQKRLQVTVMLPASGLQIVDEQEDKELLELASSLLGDRVSSIEQEVKFIRDRWKTSSPRSIALKEIGPLLRDYQRLIARRFS SEADLQKMESDLRGKETYRFYHFLNASQLRMDDISKLLEEYKQLLLSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36360			Galactose oxidase/kelch repeat...		Lus10034159 [exp]	0	1
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10001860 [exp]	7.5	0.6789
AT5G65290			LMBR1-like membrane protein (....		Lus10035927 [exp]	7.9	0.6725
AT2G19170		SLP3	subtilisin-like serine proteas...		Lus10001006 [exp]	11.0	0.6686
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10030177 [exp]	12.9	0.6733
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10042507 [exp]	13.3	0.6217
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10021652 [exp]	17.3	0.6380
AT4G28450			nucleotide binding;protein bin...		Lus10015673 [exp]	31.4	0.6270
AT1G04900			Protein of unknown function (D...		Lus10016677 [exp]	32.2	0.6228
					Lus10022247 [exp]	32.7	0.5686
AT4G30660			Low temperature and salt respo...		Lus10036592 [exp]	36.1	0.6164

Compare expression of checked genes

Lus10034159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.