Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52900 154 / 2e-48 Family of unknown function (DUF662) (.1) AT3G52920 142 / 8e-44 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2) AT2G36410 142 / 2e-43 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) AT2G36355 140 / 4e-43 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) AT2G27740 138 / 5e-42 Family of unknown function (DUF662) (.1) AT3G09980 132 / 1e-39 Family of unknown function (DUF662) (.1) AT5G03660 120 / 4e-35 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043423 [exp] 275 / 1e-95 AT3G52900 150 / 4e-46 Family of unknown function (DUF662) (.1) Lus10023876 [exp] 142 / 1e-43 AT2G36410 239 / 9e-82 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10043372 [exp] 142 / 1e-43 AT2G27740 207 / 6e-69 Family of unknown function (DUF662) (.1) Lus10019529 [exp] 141 / 2e-43 AT2G27740 201 / 9e-67 Family of unknown function (DUF662) (.1) Lus10027724 [exp] 140 / 9e-43 AT2G36410 237 / 1e-80 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10035563 [exp] 139 / 2e-42 AT2G36410 238 / 8e-81 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10014379 [exp] 127 / 3e-37 AT2G36410 214 / 4e-71 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G235600 [exp] 163 / 3e-52 AT3G09980 128 / 3e-38 Family of unknown function (DUF662) (.1) Potri.004G186900 [exp] 130 / 6e-39 AT2G27740 177 / 3e-57 Family of unknown function (DUF662) (.1) Potri.009G147500 [exp] 129 / 2e-38 AT2G27740 177 / 4e-57 Family of unknown function (DUF662) (.1) Potri.006G115400 [exp] 124 / 9e-37 AT3G09980 202 / 3e-67 Family of unknown function (DUF662) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04949 [flax] [poplar] Transcrip_act Transcriptional activator
Representative CDS sequence Show only first row Show all	>Lus10034160 pacid=23154748 polypeptide=Lus10034160 locus=Lus10034160.g ID=Lus10034160.BGIv1.0 annot-version=v1.0 ATGAGTAGCAGCAGCAGCATGGAACAAGATCACAAGAGCAGCGAGAGCGGGCAACAAGACGATGAGGTGTCTACCAGGATGGCGGTTCTCCAAGCAAAGG AAGAAGAGATCGAGAAGAGGAAAATGGCCGTGAAGGAGAGGGTTGAGCTCCAGCTGGGTCGGGTCGAAGAGGAGACCAGGAAGCTCGTTCGTGTCTGGGA AGAGATCCAAGTTATGGAAGATCCGATGAAGAAAGAGGTGGCTATGCTTCGTAAGAAGGTCGACTTAGCTAATAGAGACGTCAAGGCCTTAGCTCAGAGC TCCCAGAAGAAGGAGAAGGAATACAGAGAAGCATTGGAAGCATTCAATGAAAAGAGCAAGGAAAAGTCTGGTTTGGTTGCTACACTCAAAGAGTTGCTTG CAAGAAGTGAAAGCTTGAGGATGAAGAAGCTAGAGGAACTGAGCAAGTTCATTGAACCCACTAACTGA
AA sequence Show only first row Show all	>Lus10034160 pacid=23154748 polypeptide=Lus10034160 locus=Lus10034160.g ID=Lus10034160.BGIv1.0 annot-version=v1.0 MSSSSSMEQDHKSSESGQQDDEVSTRMAVLQAKEEEIEKRKMAVKERVELQLGRVEEETRKLVRVWEEIQVMEDPMKKEVAMLRKKVDLANRDVKALAQS SQKKEKEYREALEAFNEKSKEKSGLVATLKELLARSESLRMKKLEELSKFIEPTN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52900			Family of unknown function (DU...		Lus10034160 [exp]	0	1
AT2G27740			Family of unknown function (DU...		Lus10043372 [exp]	4.5	0.7784
AT3G52900			Family of unknown function (DU...		Lus10043423 [exp]	5.1	0.7682
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Lus10014978 [exp]	9.8	0.7603
AT2G05710		ACO3	aconitase 3 (.1)		Lus10031561 [exp]	10.6	0.7292
AT2G37210		LOG3	LONELY GUY 3, lysine decarboxy...		Lus10023190 [exp]	32.8	0.7171
AT3G19240			Vacuolar import/degradation, V...		Lus10019860 [exp]	45.7	0.7089
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10004043 [exp]	49.6	0.7234
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10021238 [exp]	51.4	0.7341
AT5G26250			Major facilitator superfamily ...		Lus10021926 [exp]	55.5	0.7111
AT2G46690			SAUR-like auxin-responsive pro...		Lus10008845 [exp]	56.0	0.7177

Compare expression of checked genes

Lus10034160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.