Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66310 76 / 4e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G69630 66 / 8e-12 F-box/RNI-like superfamily protein (.1) AT5G02700 64 / 5e-11 F-box/RNI-like superfamily protein (.1) AT3G28410 63 / 7e-11 F-box/RNI-like superfamily protein (.1) AT3G18150 59 / 3e-09 RNI-like superfamily protein (.1) AT5G18780 59 / 3e-09 F-box/RNI-like superfamily protein (.1.2) AT3G60790 58 / 5e-09 F-box family protein (.1) AT5G56440 57 / 7e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G22720 57 / 7e-09 F-box/RNI-like superfamily protein (.1.2) AT3G03360 57 / 9e-09 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024695 [exp] 255 / 1e-82 AT1G69630 83 / 3e-17 F-box/RNI-like superfamily protein (.1) Lus10024696 [exp] 246 / 7e-79 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2) Lus10002239 [exp] 232 / 1e-73 AT1G69630 91 / 5e-20 F-box/RNI-like superfamily protein (.1) Lus10042477 [exp] 232 / 2e-73 AT1G16930 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10026190 [exp] 228 / 7e-72 AT1G16930 80 / 3e-16 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10029357 [exp] 207 / 8e-64 AT3G28410 79 / 1e-15 F-box/RNI-like superfamily protein (.1) Lus10007058 [exp] 196 / 1e-59 AT5G56810 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10029589 [exp] 197 / 2e-58 AT5G02930 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Lus10001507 [exp] 192 / 2e-58 AT5G56440 91 / 6e-20 F-box/RNI-like/FBD-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 118 / 3e-30 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 106 / 6e-26 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G011200 [exp] 96 / 6e-22 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G104300 [exp] 76 / 3e-15 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 71 / 2e-13 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G024200 [exp] 60 / 9e-10 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G024300 [exp] 60 / 9e-10 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G104200 [exp] 58 / 3e-09 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.013G151200 [exp] 57 / 1e-08 AT4G03220 417 / 1e-141 Protein with RNI-like/FBD-like domains (.1) Potri.011G121400 [exp] 54 / 9e-08 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10034161 pacid=23154884 polypeptide=Lus10034161 locus=Lus10034161.g ID=Lus10034161.BGIv1.0 annot-version=v1.0 ATGAACAACAACAGAAACATTAACAGTGGCTGCTGGCAATTACGGAAAGCTGCAAAGCGGAGCGGTGACCGGGATTCTACTGACTCGTTAAGCTTTCTTC CAGATTCTGTTCTTCATCATATCCTTTCGTTCCTCGACACCAAGTCTGCAGTTCAAACCTCTGTATTGTCCCGGCAGTGGAAAGACCACTGGAAAGGTAT CCATGTGCTCAATATCGATTCCTTCGGTTATAAAGAATATCCGTGTTTCAAAAGGTATGTGGATAGTGTTTTGTCCTTCCGCTATCCACTTGATCTCAGC AAGGTCATCTTCAATGACGAGAGGTGTCCAGACGAAGACGAGGAACAAGAAGACTGCCTGTTTACCAGGGTCATCAAGTATGCTTTGGCGCACAACACTC AACATTTAGAAATGTACCTGTACATTTGGGATTCCCCGCAGTACCCGTTCGAAGACTTGTTTGGCTACGTATCTGGTTGCAATCTCAAAACTCTGCTTTT AAAAGGTTTCATACTTGATATAGAATTTCAATCTTATGGTTTCCGGATGCTGACGGATTTAGAGTTGGTGGAGTGCATGTTCTTGTTTGATGAGGAAGAG GTTATCGATCCCTTTTCTGAATTCCCCTGCCTGAAGAAGTTGGCGGTGAATGTTGCCTACACGGATGATGACAATGACAGTAAGATATTCAGGATTTCCG GACTCCAATTGACTAGTTTGGATCTTGCACATAGTAGATTTCACAACTTTGAAATCTACGCTCCAAAACTCGAGTCTTTCAATCTTTGGAGTTTTGGCGG ACTCTTGGAATTCTATGAGCTAACCATTCCTACCCTCGATCATGCTGATATTTGGGTTGAAATGGAGGAAGGAGTCGTGGAAGATGATTATGACTATGAA TTTGAAAAGCAAAATGTGGTCTCATTGTTTCATGGGTTGAGTAATGCAAGGTCCCTTATGCTGGGTGAATGTACTGTCAAGGTATTCTCCGGTTCATATT CTTGTAGTCTAACTGCTCCTTCTTAG
AA sequence Show only first row Show all	>Lus10034161 pacid=23154884 polypeptide=Lus10034161 locus=Lus10034161.g ID=Lus10034161.BGIv1.0 annot-version=v1.0 MNNNRNINSGCWQLRKAAKRSGDRDSTDSLSFLPDSVLHHILSFLDTKSAVQTSVLSRQWKDHWKGIHVLNIDSFGYKEYPCFKRYVDSVLSFRYPLDLS KVIFNDERCPDEDEEQEDCLFTRVIKYALAHNTQHLEMYLYIWDSPQYPFEDLFGYVSGCNLKTLLLKGFILDIEFQSYGFRMLTDLELVECMFLFDEEE VIDPFSEFPCLKKLAVNVAYTDDDNDSKIFRISGLQLTSLDLAHSRFHNFEIYAPKLESFNLWSFGGLLEFYELTIPTLDHADIWVEMEEGVVEDDYDYE FEKQNVVSLFHGLSNARSLMLGECTVKVFSGSYSCSLTAPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66310			F-box/RNI-like/FBD-like domain...		Lus10034161 [exp]	0	1
AT4G27510			unknown protein		Lus10004528 [exp]	2.0	0.8728
AT4G31520			SDA1 family protein (.1)		Lus10028318 [exp]	4.9	0.8358
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10037504 [exp]	5.7	0.8056
AT3G13000			Protein of unknown function, D...		Lus10034787 [exp]	6.5	0.8059
AT3G57000			nucleolar essential protein-re...		Lus10035222 [exp]	8.5	0.8042
AT3G48210			unknown protein		Lus10042089 [exp]	8.8	0.8286
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10039948 [exp]	14.1	0.8103
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Lus10036022 [exp]	15.5	0.8143
AT5G22730			F-box/RNI-like/FBD-like domain...		Lus10027471 [exp]	16.1	0.7922
AT5G54280		ATMYOS1, ATM4, ...	ARABIDOPSIS THALIANA MYOSIN 1,...		Lus10037876 [exp]	17.4	0.8253

Compare expression of checked genes

Lus10034161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.