Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28600 273 / 4e-87 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G61240 43 / 0.0004 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT3G16840 42 / 0.0007 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G00660 41 / 0.001 ATRH8 RNAhelicase-like 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043421 [exp] 612 / 0 AT2G28600 311 / 5e-102 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017804 [exp] 42 / 0.0006 AT4G00660 854 / 0.0 RNAhelicase-like 8 (.1.2) Lus10037527 [exp] 42 / 0.0008 AT2G47330 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011466 [exp] 42 / 0.001 AT2G47330 1110 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G234000 [exp] 359 / 5e-120 AT2G28600 417 / 8e-141 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G081100 [exp] 44 / 0.0002 AT4G00660 822 / 0.0 RNAhelicase-like 8 (.1.2) Potri.002G157500 [exp] 42 / 0.0005 AT4G00660 817 / 0.0 RNAhelicase-like 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10034162 pacid=23154731 polypeptide=Lus10034162 locus=Lus10034162.g ID=Lus10034162.BGIv1.0 annot-version=v1.0 ATGGCCAAAGGTGATGACGCGTTGGCCAGGAAGAAGAATAAATCTAGAAGGAAGAAGCAGCAGAAGGATACTTCTTCTTCCGCCGTATCTACTCGCGTCG CTTCCATTATTGCCGCCAAGAAACGTCGCGTCTCCGGAAAGCGTCGTCAGTGTCAGGGAATGTGCTTTAGCCTACCAACTCTAGAGGACCCCTTCAATGA CAAGTTAGGTAAAACTGATTTCCCGAAGAAAGATGTCAAAAGTGAAAAAACTCTCTCGTCAAAAAGACAAGATAGGAAGGCTTTGAAAGGAGATAGTACT GCATCAAATACAGAATCTAGTGGCAATAACGGTGGAAAGTTGGGTTTTCTGAAAGGGAGAGGCTTGAGCAGGCATGAAAACACAGCAACTCATCTGGACA AAGATGCCGGAAAAAATAGTCATAAGCTGCATGCATTTCGAAATTTGGATCGTCCATCTAAGTTCCTTCTTTTGTGCTTGAATGCTATAGAAAGTGCATT GCGCCTAGAGGGTTTGTATGGAAACGAGGAGGACAAGCCTATATTTGTTGATCCATGGGGAGTTGAGTTTCTGAAATGTTATTCAGGTGGGAAGGACATA TTGGATACTGGTGGATCATCTTGTACAATTGAGCAAATTGCCTGGATTGTTTCTATTGCTGCTGATTCATTTGCTAGAAAGGAAAAAGAAGGAGTATCAT TCACGAGCTCATTTCTTCTTTTCCTTGTCCCGTCGCAGGAAAAGGCTATGCAGGTACGCATAGTTTGCAAGCCTCTGAAATCACTTGGCGTACATACAGT CAGCTTACATCCTGGTGCATCCCTGGAGCACCAAATTAATGGTCTGAAGAGTTGCGAACCAGAGTTTCTTGTATCTACACCTGAGAGACTCCTGGAGCTT GTTTCGGCTAAAGCTATTAACATATCAGATGTTTCCTTCCTGGTTGTCGATGGACTAGAGTCTCTTAGTAAAGCTGGAAACATTGACGCTTTAAGTTCTA TACGGCAAGCTATATCTGGAAGCTCTAGTGTTATGGTGTTCAACAGTCATAACTCTGTAGCAGCTCTTGAAAAGATTCTCCCAGGACCAGTGTCTAGACT GTCTCTTGGTCAATCTATACACAGTCAGAGTTCTGGCATTGCGCAAAACAAGTCCCTGACGCCTTGA
AA sequence Show only first row Show all	>Lus10034162 pacid=23154731 polypeptide=Lus10034162 locus=Lus10034162.g ID=Lus10034162.BGIv1.0 annot-version=v1.0 MAKGDDALARKKNKSRRKKQQKDTSSSAVSTRVASIIAAKKRRVSGKRRQCQGMCFSLPTLEDPFNDKLGKTDFPKKDVKSEKTLSSKRQDRKALKGDST ASNTESSGNNGGKLGFLKGRGLSRHENTATHLDKDAGKNSHKLHAFRNLDRPSKFLLLCLNAIESALRLEGLYGNEEDKPIFVDPWGVEFLKCYSGGKDI LDTGGSSCTIEQIAWIVSIAADSFARKEKEGVSFTSSFLLFLVPSQEKAMQVRIVCKPLKSLGVHTVSLHPGASLEHQINGLKSCEPEFLVSTPERLLEL VSAKAINISDVSFLVVDGLESLSKAGNIDALSSIRQAISGSSSVMVFNSHNSVAALEKILPGPVSRLSLGQSIHSQSSGIAQNKSLTP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28600			P-loop containing nucleoside t...		Lus10034162 [exp]	0	1
AT1G24090			RNase H family protein (.1)		Lus10020869 [exp]	1.4	0.9335
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10022044 [exp]	5.5	0.9261
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10040048 [exp]	6.9	0.9130
AT4G38890			FMN-linked oxidoreductases sup...		Lus10035460 [exp]	7.4	0.9190
AT4G07410		PCN	POPCORN, Transducin family pro...		Lus10005385 [exp]	8.2	0.9217
AT4G32520		AtSHMT3, SHM3	serine hydroxymethyltransferas...		Lus10005916 [exp]	8.5	0.9074
AT2G34357			ARM repeat superfamily protein...		Lus10021944 [exp]	8.5	0.9259
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Lus10021017 [exp]	10.2	0.9081
AT4G32910			unknown protein		Lus10038723 [exp]	10.5	0.9036
AT2G34357			ARM repeat superfamily protein...		Lus10041231 [exp]	13.3	0.8961

Compare expression of checked genes

Lus10034162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.