Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18590 713 / 0 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT3G05420 220 / 1e-62 ACBP4 acyl-CoA binding protein 4 (.1.2) AT5G27630 212 / 6e-60 ACBP5 acyl-CoA binding protein 5 (.1) AT5G04420 191 / 4e-53 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT1G18610 108 / 1e-24 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74150 100 / 7e-22 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G07720 94 / 8e-21 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G36360 87 / 8e-18 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT3G16400 82 / 3e-16 ATNSP1, ATMLP-470 MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-470, nitrile specifier protein 1 (.1.2) AT5G48180 80 / 5e-16 NSP5 nitrile specifier protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043420 [exp] 1132 / 0 AT5G18590 611 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10031497 [exp] 220 / 2e-62 AT3G05420 1027 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10015176 [exp] 215 / 1e-60 AT3G05420 1024 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10029902 [exp] 213 / 5e-60 AT3G05420 1040 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10004499 [exp] 196 / 9e-54 AT3G05420 1019 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10028825 [exp] 186 / 1e-51 AT5G04420 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10037933 [exp] 187 / 2e-51 AT5G04420 648 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10038666 [exp] 184 / 1e-50 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10017457 [exp] 183 / 3e-50 AT5G04420 610 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G214900 [exp] 845 / 0 AT5G18590 819 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G022000 [exp] 839 / 0 AT5G18590 811 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G026900 [exp] 219 / 4e-62 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.013G018800 [exp] 214 / 2e-60 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.010G230300 [exp] 204 / 4e-58 AT5G04420 657 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.008G031200 [exp] 201 / 6e-57 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.005G013000 [exp] 123 / 3e-29 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G008200 [exp] 118 / 1e-27 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.015G059400 [exp] 98 / 4e-21 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 95 / 3e-20 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF07646 [flax] [poplar] Kelch_2 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10034163 pacid=23154769 polypeptide=Lus10034163 locus=Lus10034163.g ID=Lus10034163.BGIv1.0 annot-version=v1.0 ATGTTTAGCTTCTCCAAAAGACGTACTAAGCTTGGCAGGGTGAAGAAGGTGGTACAGCTCTCAGAATCGATATCTACACCAGGAGCTAGAAGCCCTGCTA GACCTCCAAAACGGGCTCCCAATCCCACTCATAATGACGAAGGAGGAGGAGGTGCGGCCACAACCAGCCGTTGCGAAGAGGAACTTGACTGTCAATGCCA ACCATCATCTGCATCTGCTTCTTCTGAGAATTGGATGGTTTTGTCTATTGCTGGAGATAAACCGCCTCCTCGCTTTAATCATGCAGCGACTGTAATTGGC AACAAAATGATAGTTGTTGGTGGTGAATCTAGTGGTGATTTGTTGGATGATGTGCAGGTTTCTTGGGGGAAGAAGGCACTTCTAATTGGAGGGAAAACTG ATCCTCACAGCGACAGAATTTCAGTGTGGGCATTTGATACAGAAACTGAATGTTGGTCCATTATGGAAGCCAAAGGAGACATACCGATTGCTCGCAGTGG CCACAGTGTGGTCAGATCAAGCTCTACTCTTATTCTGTTCGGCGGGGAAGATGCTAAAAAGAAGAAACTGAATGATCTTCACATGTTGGATCTAAAGTCT TTGACATGGCTTCCTCTCCATTGCACAGGAACAGGACCATCTCCTAGATCGAACCATGTAGCTGCTCTCTGTGATGATAAGGTGCTTCTAATCTTCGGAG GGGCATCAAAGTCACGGACGTTGAACGATTTGTATTCGCTCGACTTTGAATCGATGGTGTGGTCAAGGATAAAGATAAGGGGCTTCCATCCATCACCTAG AGCAGGTTCCTGTGGAGTTCTATGTGGAACCAAGTGGTACATAGCCGGTGGAGGAAGCAGGAAAAAGAGACACTCAGAGACATTGGTTTTTGATGTTCTG AAAGTAGAATGGTCTGTTGTCTTTGCATCACAGTCGTTTTCCATCACGACCAACAAGGGCTTTAGCTTAGTGCTTGTACAACATAAAGAAAAGGATTTCC TGGTTGCATTTGGAGGATCCAGAAAGGAGCCATCAAATCAGGTAGAAGTAATGGGATTGGACAAGCACGAATCCTCGATGGGTCGAATATCTGCCCCGGG TAAAGGCCCTGGATCTTTGGCTTTTGAGAAACATCATTCTTCATCCACAGGTCATGGGGTGTCACGGCGTTCCGGTGATTCTGTTGGTAGACAAAACTTG GCTTCTGCAATTGAACATCATGGTTCCGGTAGAAAATCCTTGTCTGACTCTTCTCTGTTGGATACGGGATGTGCCTCTGGAAATGTCTCCCTGAGAAAGC AATTTCATGAGGATGAACACAATAGAATCGTTAAGACAGTTCGGAGTTCAGATGAAGGACAGCTTGATACATCTCATAACCAGCTTGGAAAGATCATCAG GGAAGATGACTCTTCTGTGTACGGTTCGGAATGTTCAAACTTCCATAAGCAGCAAGTGAGTTCAGACCATATGGCCGAAAACGAGCGAGTGGCAGTCCCG GAGAACGACTTCCCACCTAGAGGGCCTCATTCAAGCATCTATCAACTGTACGAATCCAAAATAGCGGCTCTAATAAAGAAGAATGGGGTGCTAGAAGGAC AAGTTGCGGCCGCATTGGCAGGTCGAGAGGCAGCTGAGAAAAGCTTCTCTGCTGTGGTGAAAAGCAAGCAGGAGGTGGAGAAGAGGTTGGGGGATGCTGG AAGGGAAGTGGAATTGCTAAAAGAGAAGCTGGCTGCTGTGGAGTTAGCTCATGAAGAGGCCAACAACATGTCGAATATAGTCCATTCTGACAACGTTAGA CTTGAGCATGATGTGGCTTTCCTCAAGGCAGTTTTTGATGATACCCAGAAGGAGTTGCATTCAACTAGGGGAGTCCTTGCAGGGGAAAGGGCAAGAGCAT TTCAGCTTCAGGTTGAGGTGTTCCATCTCAAACAGAGATTGCAGTCTCTGGAAAACAGAGCACCGACTCCACGAAAACCTTACCATGTCTAG
AA sequence Show only first row Show all	>Lus10034163 pacid=23154769 polypeptide=Lus10034163 locus=Lus10034163.g ID=Lus10034163.BGIv1.0 annot-version=v1.0 MFSFSKRRTKLGRVKKVVQLSESISTPGARSPARPPKRAPNPTHNDEGGGGAATTSRCEEELDCQCQPSSASASSENWMVLSIAGDKPPPRFNHAATVIG NKMIVVGGESSGDLLDDVQVSWGKKALLIGGKTDPHSDRISVWAFDTETECWSIMEAKGDIPIARSGHSVVRSSSTLILFGGEDAKKKKLNDLHMLDLKS LTWLPLHCTGTGPSPRSNHVAALCDDKVLLIFGGASKSRTLNDLYSLDFESMVWSRIKIRGFHPSPRAGSCGVLCGTKWYIAGGGSRKKRHSETLVFDVL KVEWSVVFASQSFSITTNKGFSLVLVQHKEKDFLVAFGGSRKEPSNQVEVMGLDKHESSMGRISAPGKGPGSLAFEKHHSSSTGHGVSRRSGDSVGRQNL ASAIEHHGSGRKSLSDSSLLDTGCASGNVSLRKQFHEDEHNRIVKTVRSSDEGQLDTSHNQLGKIIREDDSSVYGSECSNFHKQQVSSDHMAENERVAVP ENDFPPRGPHSSIYQLYESKIAALIKKNGVLEGQVAAALAGREAAEKSFSAVVKSKQEVEKRLGDAGREVELLKEKLAAVELAHEEANNMSNIVHSDNVR LEHDVAFLKAVFDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLENRAPTPRKPYHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18590			Galactose oxidase/kelch repeat...		Lus10034163 [exp]	0	1
AT4G22840			Sodium Bile acid symporter fam...		Lus10028901 [exp]	6.0	0.7657
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10023110 [exp]	6.1	0.8356
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10009475 [exp]	7.7	0.8081
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Lus10010101 [exp]	12.6	0.8288
					Lus10002011 [exp]	14.7	0.8191
AT3G24050	GATA	GATA1	GATA transcription factor 1 (....		Lus10031464 [exp]	15.5	0.7717
AT4G27340			Met-10+ like family protein (....		Lus10037871 [exp]	15.7	0.7926
AT5G23690			Polynucleotide adenylyltransfe...		Lus10016719 [exp]	18.3	0.8216
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10032458 [exp]	20.2	0.8088
AT2G41720		EMB2654	EMBRYO DEFECTIVE 2654, Tetratr...		Lus10042068 [exp]	21.7	0.7589

Compare expression of checked genes

Lus10034163 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.