Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39090 764 / 0 APC7, AtAPC7 anaphase-promoting complex 7, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) AT3G48150 77 / 1e-14 CDC23, APC8 anaphase-promoting complex subunit 8 (.1) AT3G16320 62 / 6e-10 CDC27a Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043419 [exp] 952 / 0 AT2G39090 756 / 0.0 anaphase-promoting complex 7, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10004242 [exp] 77 / 1e-14 AT3G48150 895 / 0.0 anaphase-promoting complex subunit 8 (.1) Lus10042152 [exp] 77 / 1e-14 AT3G48150 904 / 0.0 anaphase-promoting complex subunit 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G215100 [exp] 851 / 0 AT2G39090 752 / 0.0 anaphase-promoting complex 7, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.010G022100 [exp] 848 / 0 AT2G39090 747 / 0.0 anaphase-promoting complex 7, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.012G075000 [exp] 73 / 2e-13 AT3G48150 957 / 0.0 anaphase-promoting complex subunit 8 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034164 pacid=23154886 polypeptide=Lus10034164 locus=Lus10034164.g ID=Lus10034164.BGIv1.0 annot-version=v1.0 ATGGATATCTCCAAAGAACAAATCGCCACTCTCCTCGATCACGACCTCCACGTCTCCGCTCAAATGCTTGGCTGCTTCCTTGCTTCCTCTACTTCAGCTA ACCCTGAAACTAGCCCTCAGCTCAAGGCCGAAAACCTGATTCTTCTTGGAGACTCACTGTTACACGGGAGGGAGTATAAAAGGGCTATTCATACATATAA GCAAGCGTTGCAGTGCTGTAAGATTATCCCCAAACAAAATTCAACTTCTGCTAGAACTTCACTATCCACCAGGTCTTCTTCGCCGAGTTCTTTAAACGTT TCAGTTATTAATGAAAACGAGGTTAAGTTCAAGATTGCTTCTTGTCATTTCTCGCTGAATGAAACCAGATTGGCTATAGCTGAGATGGAGGGAATTCCGA GCAAAGCAAGAACTTTGCAGATGAGTTTGTTATTAGCAAAGCTTTTCCGACGTTCCAGACATAATCGATATGCTATTGCTTGTTACAGAGAGTGTTTAAG GCATTGTCCCTATGTAATTGAAGCTATTATAGCCTTAGCTGAACTGGGAGTTGCCGCCAAGGATATAAATTCATTGCTCTCACAGACACCACATAGAAGT GGAAGGGCGCAATTTGACCATGCTGACTCAAACAGATGGCTACCACGCTATGTTGAGGCGCAATGTTGTGTGGCTGCTAATGATTACAGAGGAGGGTTGG AGCTCTTTGCTGAACTTCTACAAAGGTTTCCTAGCAACATACACCTATTACTTGAAACTGCTAAGGTAGAGGCCATTACTGGAAAGAATGACGAAGCTAT AGTGAACTTTGAAAAGGTGCGCTCGCTGGATCCATATGTCATTACATATATGGATGAGTATGCAATGCTTTTGAAGACAAAGTCTGACTACACAAAGTTG AATAAACTAGTTCATGATCTTCTCAGTATTGATCCTATGAGACCGGAAGTCTTTGTAGCTCTGTCAGTTTTGTGGGGAAGGAAGGATGAGAGAGGAGCTT TGTCTTATGCTGAGAAGAGCATCCGAATTGATGAGAGGCACATCCCAGCGTACATTATGAAGGGGAAGATACTTCTATCACTAAAGAGACCAGAAGCAGC TGTGCTAGCATTCAGGGGAGCACAAGATTTGAGATCTGATCTTCGTTCATATCAAGGTCTTGTTCATGCTTATCTCGATTTCTCCAAGACCAAAGAAGCA CTGCACGCTGCTAGGGAGGCAATGAAGGCCATGCCTCAATCTGCGAAAGCTCTAAAATTAGTCGGGGATGTGCATGCTAGCCACTCGAGTGGCAGGGAAA AGGCGAAGAAGTTTTATGAGTCAGCGTTGAGGCTGGAACCTGGATACCTTGGAGCTGTAATGGCTTTAGCGGAGCTCCATGTCATAGAGGGTAGAAATTC AGATGCAGTATCTCTGCTTGAGAGGTACCTAAAAGATTGGGCTGATGACTCGCTTCATGTAAAGCTGGCACAAATATTTGCCGCCACAAATATGTTGCAA GAAGCTTTATCTCACTTTCAGGCTGCAGTAAGGTTGAATTCCCAGAATGAAGCAGCGAAGAAAGGCTTAGAGCGCTTGGAGAAACAAATGAAGGGGGTGG ATCCGGATGCCCCTGAAGAAGATGAAGAAAATGAAGTTGAGGATGGCGATGAAGAACCAGACGAGATAGAGCTTCTTCGAGAGTAA
AA sequence Show only first row Show all	>Lus10034164 pacid=23154886 polypeptide=Lus10034164 locus=Lus10034164.g ID=Lus10034164.BGIv1.0 annot-version=v1.0 MDISKEQIATLLDHDLHVSAQMLGCFLASSTSANPETSPQLKAENLILLGDSLLHGREYKRAIHTYKQALQCCKIIPKQNSTSARTSLSTRSSSPSSLNV SVINENEVKFKIASCHFSLNETRLAIAEMEGIPSKARTLQMSLLLAKLFRRSRHNRYAIACYRECLRHCPYVIEAIIALAELGVAAKDINSLLSQTPHRS GRAQFDHADSNRWLPRYVEAQCCVAANDYRGGLELFAELLQRFPSNIHLLLETAKVEAITGKNDEAIVNFEKVRSLDPYVITYMDEYAMLLKTKSDYTKL NKLVHDLLSIDPMRPEVFVALSVLWGRKDERGALSYAEKSIRIDERHIPAYIMKGKILLSLKRPEAAVLAFRGAQDLRSDLRSYQGLVHAYLDFSKTKEA LHAAREAMKAMPQSAKALKLVGDVHASHSSGREKAKKFYESALRLEPGYLGAVMALAELHVIEGRNSDAVSLLERYLKDWADDSLHVKLAQIFAATNMLQ EALSHFQAAVRLNSQNEAAKKGLERLEKQMKGVDPDAPEEDEENEVEDGDEEPDEIELLRE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39090		APC7, AtAPC7	anaphase-promoting complex 7, ...		Lus10034164 [exp]	0	1
AT1G73020			unknown protein		Lus10009732 [exp]	3.5	0.8907
AT2G44980		ASG3	ALTERED SEED GERMINATION 3, SN...		Lus10028186 [exp]	4.5	0.8681
AT3G54980			Pentatricopeptide repeat (PPR)...		Lus10019524 [exp]	7.9	0.8749
AT2G47020			Peptide chain release factor 1...		Lus10009980 [exp]	8.5	0.8679
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10012908 [exp]	9.2	0.8677
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10019119 [exp]	9.5	0.8749
AT5G21080			Uncharacterized protein (.1)		Lus10016400 [exp]	11.6	0.8017
					Lus10005904 [exp]	12.0	0.8498
AT2G03667			Asparagine synthase family pro...		Lus10004643 [exp]	12.6	0.8229
AT3G49725			GTP-binding protein, HflX (.1)		Lus10018404 [exp]	14.1	0.8085

Compare expression of checked genes

Lus10034164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.