Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39100 192 / 2e-59 RING/U-box superfamily protein (.1) AT3G05250 50 / 5e-07 RING/U-box superfamily protein (.1) AT3G05670 51 / 8e-07 RING/U-box protein (.1) AT5G12310 48 / 2e-06 RING/U-box superfamily protein (.1) AT5G19430 44 / 5e-05 RING/U-box superfamily protein (.1.2) AT5G17600 45 / 6e-05 RING/U-box superfamily protein (.1) AT5G43420 44 / 7e-05 RING/U-box superfamily protein (.1) AT1G32361 44 / 0.0001 ATL1F RING/U-box superfamily protein (.1) AT1G04360 43 / 0.0002 RING/U-box superfamily protein (.1) AT3G03550 43 / 0.0002 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015213 [exp] 53 / 3e-07 AT3G05670 368 / 2e-112 RING/U-box protein (.1) Lus10004467 [exp] 50 / 8e-07 AT3G05250 288 / 9e-98 RING/U-box superfamily protein (.1) Lus10031468 [exp] 50 / 2e-06 AT3G05670 343 / 2e-107 RING/U-box protein (.1) Lus10042890 [exp] 47 / 1e-05 AT2G44950 885 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Lus10036034 [exp] 45 / 3e-05 AT5G19430 231 / 7e-76 RING/U-box superfamily protein (.1.2) Lus10009695 [exp] 45 / 4e-05 AT5G19430 221 / 3e-72 RING/U-box superfamily protein (.1.2) Lus10029940 [exp] 44 / 7e-05 AT3G05250 227 / 3e-74 RING/U-box superfamily protein (.1) Lus10040389 [exp] 44 / 0.0002 AT2G37150 191 / 1e-53 RING/U-box superfamily protein (.1.2.3) Lus10011184 [exp] 42 / 0.0002 AT4G03510 164 / 5e-50 RING membrane-anchor 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G215200 [exp] 237 / 1e-76 AT2G39100 248 / 1e-81 RING/U-box superfamily protein (.1) Potri.005G035600 [exp] 56 / 9e-09 AT3G05250 308 / 7e-106 RING/U-box superfamily protein (.1) Potri.005G021000 [exp] 52 / 3e-07 AT3G05670 436 / 2e-140 RING/U-box protein (.1) Potri.013G011400 [exp] 52 / 4e-07 AT3G05670 417 / 7e-133 RING/U-box protein (.1) Potri.014G055800 [exp] 49 / 4e-06 AT2G44950 917 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Potri.010G092300 [exp] 45 / 4e-05 AT4G14220 248 / 6e-79 RING-H2 group F1A (.1) Potri.007G097500 [exp] 44 / 7e-05 AT5G10380 145 / 2e-40 RING/U-box superfamily protein (.1) Potri.011G120800 [exp] 44 / 8e-05 AT4G27470 167 / 7e-51 RING membrane-anchor 3 (.1) Potri.001G275900 [exp] 44 / 9e-05 AT5G19430 236 / 3e-78 RING/U-box superfamily protein (.1.2) Potri.013G073500 [exp] 44 / 0.0001 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10034165 pacid=23154633 polypeptide=Lus10034165 locus=Lus10034165.g ID=Lus10034165.BGIv1.0 annot-version=v1.0 ATGGAGTTCTCTTCCAGAAGGCCATCGAGATACCGCTACAGCAAGGAAAAGTATCTATCGGCGGTTATTTCGCCGGCGATAAGGGATAAAATTTGCTCGA TATGCTTGACAGCGCTCCACGATCATCGCAGAACGGCGGTTATTTCTGCCTGCTTGCACGCCTATTGCTTGCCGTGCATACGCCGATGGAGCGAGGTGAA GCAGCGGTGCCCTCTCTGCAACGTGGCGTTCGATTGCTGGCACTGTAGGATTAGCCTCTCATCCCGCACGTTTGTGACTGAGAAACTCCCTACTCAAGCT CCGGTGAAAGCCAAGGCGGTGGTGCCCATTCCGCGCCGCAGATTCCTTCCTCGAAATCCCTTACGGACTTGCAGGATAACTGGGAATTTGCCTTGGCGGC GAACTTTTTCCGGCGCCGAAGGAAGGGTTCGGTGGCGAGCAAGCATATACGATCAATCGCTGCGGGCTGTTCCAATAGCTGATCATACTGCTAGGAGGAA GTCAGCCGATGACATACTGCAGAGGATAGAACCGTGGTTACGAAGGGAATTGCAGGCTGTCCTTGAAGACCCAGATCCATCTATCATTGTTCACGTAGCC TCCTCGCTCTACGTTGCAAGTCTTGAACAAAATTCTCATCCTCAATCTGGACAAACTGACGTTGCAGATGGCTTCCTCGACCCCTTGAGACCTTTTCTAC GTGACCGGACTGAGATGCTTTGGCATGAACTTAGAAGTTTTGCAGCAAGCCCACTGAATATGGAAACATATGACGAGGTTGTTAACGGAAGAGGACAGTT GAGAGTATCAGAGTCCAAGCATGAAATGCAGTTGTTGTTACTCAAGCTCAATTCCAGCTCTAGCAAGCTTATCATGCCTTCTCCTTCTCCCCCATCTTCC TACCGTGTCAAGCGTCCCAAGCTGAATCAAGATCTCGCTCTGCACAAAATCGCTTTAGAGGCAGGCTCGACTCCCGTAGGCGCAACATTGTGA
AA sequence Show only first row Show all	>Lus10034165 pacid=23154633 polypeptide=Lus10034165 locus=Lus10034165.g ID=Lus10034165.BGIv1.0 annot-version=v1.0 MEFSSRRPSRYRYSKEKYLSAVISPAIRDKICSICLTALHDHRRTAVISACLHAYCLPCIRRWSEVKQRCPLCNVAFDCWHCRISLSSRTFVTEKLPTQA PVKAKAVVPIPRRRFLPRNPLRTCRITGNLPWRRTFSGAEGRVRWRASIYDQSLRAVPIADHTARRKSADDILQRIEPWLRRELQAVLEDPDPSIIVHVA SSLYVASLEQNSHPQSGQTDVADGFLDPLRPFLRDRTEMLWHELRSFAASPLNMETYDEVVNGRGQLRVSESKHEMQLLLLKLNSSSSKLIMPSPSPPSS YRVKRPKLNQDLALHKIALEAGSTPVGATL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39100			RING/U-box superfamily protein...		Lus10034165 [exp]	0	1
AT1G67170			unknown protein		Lus10030976 [exp]	3.7	0.7857
AT2G47970			Nuclear pore localisation prot...		Lus10027618 [exp]	5.2	0.7735
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10040400 [exp]	7.5	0.7807
AT1G52950			Nucleic acid-binding, OB-fold-...		Lus10003298 [exp]	15.0	0.6941
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022543 [exp]	20.4	0.7195
AT3G19860	bHLH	bHLH121	basic Helix-Loop-Helix 121, ba...		Lus10028456 [exp]	23.4	0.7390
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Lus10019164 [exp]	24.0	0.7426
AT4G24200			Transcription elongation facto...		Lus10028515 [exp]	24.6	0.7723
AT4G31400		CTF7	damaged DNA binding;DNA-direct...		Lus10016954 [exp]	25.5	0.7474
AT3G13670			Protein kinase family protein ...		Lus10039203 [exp]	29.8	0.7243

Compare expression of checked genes

Lus10034165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.