Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18570 597 / 0 EMB3138, ATOBGL, CPSAR1, EMB269, ATOBGC EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) AT1G07615 143 / 2e-36 GTP-binding protein Obg/CgtA (.1) AT4G39520 69 / 2e-12 GTP-binding protein-related (.1) AT1G30580 67 / 2e-11 GTP binding (.1) AT1G56050 67 / 2e-11 GTP-binding protein-related (.1) AT1G17470 66 / 2e-11 ATDRG1 developmentally regulated G-protein 1 (.1.2) AT1G72660 66 / 3e-11 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT5G57960 58 / 1e-08 GTP-binding protein, HflX (.1) AT1G80770 55 / 9e-08 PDE318 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043418 [exp] 1043 / 0 AT5G18570 724 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10024297 [exp] 176 / 4e-48 AT5G18570 171 / 2e-46 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10016548 [exp] 143 / 2e-36 AT1G07615 511 / 1e-178 GTP-binding protein Obg/CgtA (.1) Lus10040813 [exp] 115 / 1e-27 AT1G07615 293 / 1e-95 GTP-binding protein Obg/CgtA (.1) Lus10006128 [exp] 70 / 9e-14 AT5G18570 62 / 5e-12 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10005800 [exp] 69 / 4e-12 AT4G39520 682 / 0.0 GTP-binding protein-related (.1) Lus10006801 [exp] 69 / 4e-12 AT4G39520 655 / 0.0 GTP-binding protein-related (.1) Lus10023261 [exp] 68 / 1e-11 AT1G30580 711 / 0.0 GTP binding (.1) Lus10038543 [exp] 67 / 1e-11 AT1G30580 713 / 0.0 GTP binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G022400 [exp] 662 / 0 AT5G18570 687 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.002G029600 [exp] 169 / 1e-45 AT5G18570 144 / 7e-37 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.001G239600 [exp] 140 / 3e-35 AT1G07615 511 / 3e-178 GTP-binding protein Obg/CgtA (.1) Potri.007G080900 [exp] 70 / 1e-12 AT4G39520 647 / 0.0 GTP-binding protein-related (.1) Potri.011G164000 [exp] 67 / 1e-11 AT1G30580 691 / 0.0 GTP binding (.1) Potri.001G465900 [exp] 67 / 1e-11 AT1G30580 681 / 0.0 GTP binding (.1) Potri.003G063500 [exp] 66 / 3e-11 AT1G72660 678 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.001G457900 [exp] 66 / 3e-11 AT1G56050 663 / 0.0 GTP-binding protein-related (.1) Potri.001G170300 [exp] 65 / 7e-11 AT1G72660 677 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.002G134900 [exp] 53 / 3e-07 AT1G80770 576 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase CL0023 [flax] [poplar] PF09269 [flax] [poplar] DUF1967 Domain of unknown function (DUF1967) CL0023 [flax] [poplar] PF01018 [flax] [poplar] GTP1_OBG GTP1/OBG
Representative CDS sequence Show only first row Show all	>Lus10034166 pacid=23154707 polypeptide=Lus10034166 locus=Lus10034166.g ID=Lus10034166.BGIv1.0 annot-version=v1.0 ATGGCGGCCACCATATCCGTATCCTGCTTCTTTACCCAGGCTCTAGCTCGCTCCAATGCCCGAACTCTCAAGCGTGGCGATCCTGCCAGCAATAAGTCCT CTAGAAACCTTAACTACAATCGCACATCCAAACGGAAGCCTCAGAGGACCACCTACAAGCCTCCGCCCCCAACAGTACCCATTCCCGGCGACGGCGGCGA CGCTACCACCTACACTTGCCTACCTGTCCGAGAAGATTTCTCCCTCCCTTCCTTAGTTTCTGCGGCGGAGGTCGTCAGGCTTTCTGATTCAGGTGCTGCC GGATTTCCCAAATTGAGCCAAGGAGGAGAAGATGAAGCGGCCAGAGGAATTGAAGATCACGCGAGATACGAGGAGTACGATGCAGCCGGTTCTGAATCCG ACGATGAGGAGATTGATTTTGACAGTGGAGAGGTGGATGAGGAAGGTGATGAAAATGATTTCTCCTACCAAGTGTTGGATGAGTTCACCGGAGATGTAGG AGGCAGAATGTTGGAGGATCCTGATTACGAAGGGAACGAGGAAGATGAAGATGAAGTCAAGGAGAAGGGAGTTCCGGCGGTGATGCGGTGCTTCGACAGA GCTAAAATATACGTGAAAGCCGGCGACGGCGGCAACGGCGTGGTGGCATTCCGCAGGGAGAAGTTCGTGCCGTTGGGAGGTCCGTCTGGAGGGGATGGAG GCAGAGGAGGTAATGTGTACTTGGAAGTTGACAGTTCCATGAATTCGCTGTTACCGTTTAGGAACAAAGTGCATCACAGGGCAGGGAGAGGGTCACATGG ACAAGGAATCACATGGACAATGAAGTATGATGAGTGGGGCAAAGGGAGAGGACGTGGTGGTGAAGGTAGCTCCCGGGACGTTGGTGGAAGAGGGAATACT GCATTTAAGTGTGGCAGCAATAAGGTACCTCGGATTGCTGAGAATGGAGAAGAAGGTACTGAAATGTGGATAGAGCTGGAATTGAAGCTAGTTGCAGATG TGGGTATAGTTGGTGCTCCAAATGCAGGGAAAAGCACACTGTTGAGCGTGATCAGTGCTGCACAACCAGCAATAGCAAACTACCCTTTTACTACATTACT CCCGAATCTCGGCGTGGTTTCTTTTGATTATGATTCTACTATGGTAGTAGCAGATCTTCCAGGTTTGCTCGAAGGAGCACACAGAGGTTTTGGTTTAGGC CATGAGTTCCTGCGGCACACTGAAAGATGTTCTGCACTGATACATGTTGTTGATGGCTCTTTACAGCAGCCGGATCTTGAATTTGAGGCCGTACGTCTTG AGCTGGAGCTGTTCAGTCCTGAACTTGCAGAAAAGCCATATATAGTCGCCTATAACAAAATGGACCTTCCAGAGGCATATGAGAAATGGACCTTTTTCAA GGAGCAGTTACAAGCTCAAGGCATTGAACCTTTTTGCATGAGTGCTGTGACCAGAGAGGGCACTCAAGAAGTGATTTCTGCAGCTTACGAGCTGCTGCAA AAGAGTAAAAAACCCGATGAAGATTGGGAAGGTCGAATGGATGCTGTAAACTTGAATCATGTAGCTGACAAGGTGAAGAAACAACAACGAGCTCCAATTA ACGACTTTGTGATCTCACATGACAGTGAATCCAATACATGGCACGTCACCGGGCCTGGGTTGCAACGTTTTGTTCAGATGACAAATTGGCGATATGTGGA TTCTGAAAGGAGATTTCAGCATGTCCTGGAGGCCTGTGGGGTAAATAAGTCGTTGTTGAAGATGGGTGTCAAGGAGGGTGACACAGTGATTGTTGGAGAG ATGGAAATGGAATGGCACGATTATCCGGAGAGATCCGGTCCATCGAACATGATGAGGCGCTCACTTGATTCAGCTAGATGGCCTCAACGGGAATAA
AA sequence Show only first row Show all	>Lus10034166 pacid=23154707 polypeptide=Lus10034166 locus=Lus10034166.g ID=Lus10034166.BGIv1.0 annot-version=v1.0 MAATISVSCFFTQALARSNARTLKRGDPASNKSSRNLNYNRTSKRKPQRTTYKPPPPTVPIPGDGGDATTYTCLPVREDFSLPSLVSAAEVVRLSDSGAA GFPKLSQGGEDEAARGIEDHARYEEYDAAGSESDDEEIDFDSGEVDEEGDENDFSYQVLDEFTGDVGGRMLEDPDYEGNEEDEDEVKEKGVPAVMRCFDR AKIYVKAGDGGNGVVAFRREKFVPLGGPSGGDGGRGGNVYLEVDSSMNSLLPFRNKVHHRAGRGSHGQGITWTMKYDEWGKGRGRGGEGSSRDVGGRGNT AFKCGSNKVPRIAENGEEGTEMWIELELKLVADVGIVGAPNAGKSTLLSVISAAQPAIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHRGFGLG HEFLRHTERCSALIHVVDGSLQQPDLEFEAVRLELELFSPELAEKPYIVAYNKMDLPEAYEKWTFFKEQLQAQGIEPFCMSAVTREGTQEVISAAYELLQ KSKKPDEDWEGRMDAVNLNHVADKVKKQQRAPINDFVISHDSESNTWHVTGPGLQRFVQMTNWRYVDSERRFQHVLEACGVNKSLLKMGVKEGDTVIVGE MEMEWHDYPERSGPSNMMRRSLDSARWPQRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10034166 [exp]	0	1
AT5G19540			unknown protein		Lus10034912 [exp]	6.3	0.8892
AT5G36170		ATPRFB, HCF109	high chlorophyll fluorescent 1...		Lus10036446 [exp]	6.3	0.8863
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Lus10014672 [exp]	8.2	0.8959
AT1G56180			unknown protein		Lus10006532 [exp]	8.5	0.8917
AT5G03900			Iron-sulphur cluster biosynthe...		Lus10021361 [exp]	10.1	0.8762
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Lus10004576 [exp]	10.2	0.8939
AT3G19220		CYO1 ,SCO2	SNOWY COTYLEDON 2, SHI-YO-U ME...		Lus10014051 [exp]	19.7	0.8448
AT1G23740		AOR	alkenal/one oxidoreductase, Ox...		Lus10030615 [exp]	21.2	0.8760
AT5G27270		EMB976	EMBRYO DEFECTIVE 976, Tetratri...		Lus10003465 [exp]	25.5	0.8576
AT1G54350		ABCD2	ATP-binding cassette D2, ABC t...		Lus10001839 [exp]	26.0	0.8703

Compare expression of checked genes

Lus10034166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.