Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15830 269 / 1e-89 ARM repeat superfamily protein (.1) AT5G14790 189 / 1e-57 ARM repeat superfamily protein (.1) AT3G01450 181 / 8e-55 ARM repeat superfamily protein (.1) AT3G18530 86 / 6e-19 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043416 [exp] 502 / 0 AT4G15830 291 / 2e-98 ARM repeat superfamily protein (.1) Lus10014533 [exp] 195 / 6e-60 AT5G14790 323 / 2e-109 ARM repeat superfamily protein (.1) Lus10032152 [exp] 193 / 2e-59 AT5G14790 324 / 3e-110 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G221700 [exp] 335 / 1e-115 AT4G15830 318 / 5e-109 ARM repeat superfamily protein (.1) Potri.008G221900 [exp] 329 / 3e-113 AT4G15830 293 / 2e-99 ARM repeat superfamily protein (.1) Potri.010G014200 [exp] 315 / 9e-108 AT4G15830 309 / 1e-105 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF12348 [flax] [poplar] CLASP_N CLASP N terminal
Representative CDS sequence Show only first row Show all	>Lus10034168 pacid=23154806 polypeptide=Lus10034168 locus=Lus10034168.g ID=Lus10034168.BGIv1.0 annot-version=v1.0 ATGGCGTTAAGGCCCATCGACAATGCTATGCCGGTGCCCCCGCCGGAGCGTCCAAAGAAGCAACTCAAACTCTCAGTTGATCAGAAACAACAACAACAAC AGCCTCCTCCAGAATCAGACGAAAACAAGGCACCAGATGCTTCCATCGATTACGTCCCTTCTGAACAACTCACCGCCCCAGAAGATCCGGACTCGGAGAT CCAGGATATGATTGAGGGCTTAGAGTCCAAAGACTGGGTGAAGCTCTGTGCTTCTCTGAATAAGGCGAGGCGATTTGCTATTTTCCACTCAGAGCTCTTG CTTCCTAACCTAGAAAAGGCGATGATGGTGCTGGTTAAGGCAATGAAGAACCCTAGAAGTGCTCTGTGCAAGACTTCCATCATGGCTTCCTCTGATATCG TCTCTGCTTATGGCGACAAGCTGCTTGATTCAACAACAGATGCATTCGATAGCTTGCTTCTGCAGCTGCTGCTGAAATCTTCGCAGGACAAAAAGTTTGT CTGTGAAGAAGCAGACAGAGCTTTGAACTCCATGGTAAGGTCAATCGCTCCACTGTCCCTGCTGCAGAAGCTCAAGGTGTATGGAAGTCACTCTAACCTT AGAGTCAGGGCTAAAGCTGCAGTTTACATATCCAGTGCAGTCACCAAGATGGGGTTGGAAGCCATGACTGAATTCGGACTCGTACCCCTAGTTCAGATGT CCATAGCCTTGCTGAGTGATAAGCTTCCTGAAGCCAGAGAAGCAGCAAGGAAGATTGTTGTTTCCATCTGTGGAGCATACACGAGAGATGAACAAGAGGA GCAGAAGAAGCTGGAGGTGTGGCAAAACTTCTGCGAATCGAGTTTGCCACCTGTTCATGCTCAATCTTTGATTAAAATTACAAGAGATTCTGTTGCTGGT GCTGCAGTAGTAGCCAGAGCAGGATAG
AA sequence Show only first row Show all	>Lus10034168 pacid=23154806 polypeptide=Lus10034168 locus=Lus10034168.g ID=Lus10034168.BGIv1.0 annot-version=v1.0 MALRPIDNAMPVPPPERPKKQLKLSVDQKQQQQQPPPESDENKAPDASIDYVPSEQLTAPEDPDSEIQDMIEGLESKDWVKLCASLNKARRFAIFHSELL LPNLEKAMMVLVKAMKNPRSALCKTSIMASSDIVSAYGDKLLDSTTDAFDSLLLQLLLKSSQDKKFVCEEADRALNSMVRSIAPLSLLQKLKVYGSHSNL RVRAKAAVYISSAVTKMGLEAMTEFGLVPLVQMSIALLSDKLPEAREAARKIVVSICGAYTRDEQEEQKKLEVWQNFCESSLPPVHAQSLIKITRDSVAG AAVVARAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15830			ARM repeat superfamily protein...		Lus10034168 [exp]	0	1
AT4G32830		ATAUR1	ataurora1 (.1)		Lus10005487 [exp]	2.0	0.9645
AT5G17160			unknown protein		Lus10038036 [exp]	4.0	0.9625
AT3G03130			unknown protein		Lus10009977 [exp]	4.2	0.9614
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10006851 [exp]	5.7	0.9611
AT3G12870			unknown protein		Lus10031776 [exp]	7.3	0.9516
AT3G44050			P-loop containing nucleoside t...		Lus10008438 [exp]	9.5	0.9537
AT1G49870			unknown protein		Lus10002116 [exp]	10.9	0.9496
AT3G06030		AtANP3, MAPKKK1...	NPK1-related protein kinase 3 ...		Lus10034060 [exp]	13.0	0.9483
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10010483 [exp]	13.3	0.9406
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Lus10011687 [exp]	14.9	0.9311

Compare expression of checked genes

Lus10034168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.